PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_9437011g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 107aa    MW: 11791 Da    PI: 6.7917
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_9437011g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.7e-092063344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +l+ +a + + ++   +W+++a+ +g g++++++k ++
  MA_9437011g0010 20 NWTFKQNKLFENALAIYDKDtpdRWHKVASVVG-GKSPEEVKRHY 63
                     8********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.9071671IPR017884SANT domain
SMARTSM007178.5E-91769IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-51973IPR009057Homeodomain-like
CDDcd001672.36E-82067No hitNo description
PfamPF002491.1E-62063IPR001005SANT/Myb domain
SuperFamilySSF466891.48E-122074IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MACQSASSSD KHSSNSTATN WTFKQNKLFE NALAIYDKDT PDRWHKVASV VGGKSPEEVK  60
RHYEILLEDL NSIEAGQVPF PNYISSRPNN REILGGGKPI LGNSDNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-291386376RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1242781e-169BT124278.1 Picea sitchensis clone WS0472_I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106182.11e-35PREDICTED: protein RADIALIS-like 6
RefseqXP_013590823.11e-35PREDICTED: protein RADIALIS-like 6
RefseqXP_013652446.11e-35protein RADIALIS-like 6
RefseqXP_013700871.11e-35protein RADIALIS-like 6
SwissprotQ1A1734e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLD5ADC12e-72D5ADC1_PICSI; Uncharacterized protein
STRINGBra015856.1-P6e-35(Brassica rapa)
STRINGBo6g119390.16e-35(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-35RAD-like 6