PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_9438016g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 232aa    MW: 26689.9 Da    PI: 5.8246
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_9438016g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171861146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  MA_9438016g0010 18 RGNFSPDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEVKNYWNT 61
                     89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.13E-17568IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-5724IPR009057Homeodomain-like
PROSITE profilePS5129426.1581367IPR017930Myb domain
SMARTSM007172.5E-161765IPR001005SANT/Myb domain
PfamPF002495.2E-161861IPR001005SANT/Myb domain
CDDcd001671.29E-122063No hitNo description
Gene3DG3DSA:1.10.10.601.4E-212564IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTLIWFRWVN YLRPNLKRGN FSPDEEDLII RLHKLLGNRW SLIAGRIPGR TDNEVKNYWN  60
TRLNKKAHAT AYIGLNSTRP TEPNIKEPAV SANQEGEREN VIYYPVIEDL NKGSSSSSYP  120
YSGPIAGVSA DIDLWNPLQL NFNIHPPWAY SNFLHDDSNS AFLPKPIVYN QENAHPLSSM  180
FDTENICQDH QMYSVPYSSL PFPEVGVQSD ALTFIPHMDE FADIFNHFQK LY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1476748108B-MYB
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGorai.009G040800.12e-32(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.16e-33myb domain protein 82