PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_94467g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 240aa    MW: 27507.3 Da    PI: 8.636
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_94467g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.8e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed ll + ++ +G g+W+  +++ g+ R++k+c++rw++yl
    MA_94467g0010 14 RGPWTAKEDNLLTRWIEWHGEGDWRNLPEKAGLLRCGKSCRLRWLNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding50.45.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
    MA_94467g0010  67 RGNISSDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                      78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.787961IPR017930Myb domain
SuperFamilySSF466897.49E-2811108IPR009057Homeodomain-like
SMARTSM007171.7E-101363IPR001005SANT/Myb domain
PfamPF002493.2E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-201568IPR009057Homeodomain-like
CDDcd001671.22E-81661No hitNo description
PROSITE profilePS5129425.40762116IPR017930Myb domain
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
PfamPF002492.2E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2469116IPR009057Homeodomain-like
CDDcd001671.59E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRTPCCSQV GLHRGPWTAK EDNLLTRWIE WHGEGDWRNL PEKAGLLRCG KSCRLRWLNY  60
LRPTIKRGNI SSDEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNS HLRKKLRKQG  120
IDPATHKPLE SKHHVHKNTE DDHTHENNKA SSLEDGQVQT GQNEEVGQAR ESPSTDYQYA  180
ATLLMQQPVH LPKANRYISF PPGINSNHDD SEGMDSHIKK SMQGAMDDLR HSSAEPLNXX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218760.18e-77myb-related protein 308
SwissprotQ388503e-72MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A222UAF42e-81A0A222UAF4_GINBI; R2R3MYB10
STRINGEMJ199593e-76(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-74myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]