PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_9544g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 89aa    MW: 10194.2 Da    PI: 5.6944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_9544g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-103976645
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     + E++l+++++k+ G + W++Ia +++ gRt++++  +w 
     MA_9544g0010 39 EAEEDLIIRLHKLVGDR-WSLIAGRIP-GRTPEEIEKYWK 76
                     78*************99.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5942983IPR017930Myb domain
SMARTSM007173.3E-93381IPR001005SANT/Myb domain
SuperFamilySSF466895.54E-93579IPR009057Homeodomain-like
CDDcd001671.12E-73776No hitNo description
PfamPF002497.6E-103977IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-133977IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MDHADTDQDR LSSSHTDKEV VEEGGGGGER KTRSTDMNEA EEDLIIRLHK LVGDRWSLIA  60
GRIPGRTPEE IEKYWKSRQQ ENSKRKTSN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1151751e-138BT115175.1 Picea glauca clone GQ03610_N05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592819.15e-19MYB-like transcription factor ETC1
RefseqXP_028193891.15e-19MYB-like transcription factor ETC1
TrEMBLA0A445HSS61e-17A0A445HSS6_GLYSO; MYB-like transcription factor ETC1
TrEMBLK7LVX51e-17K7LVX5_SOYBN; Uncharacterized protein
STRINGGLYMA12G32130.32e-18(Glycine max)
STRINGXP_006292044.17e-18(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3921825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.17e-21MYB_related family protein