PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_959414g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 146aa    MW: 17101.6 Da    PI: 7.5955
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_959414g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS181.65.6e-561144230374
            GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                     ++++lsPkv++vveqe++hn++ +++rf+eal+yysa+fdsle++lp++s er ++E+ l+g++i n+vaceg+er+erhe+l++W +r+ eaGF
  MA_959414g0010   1 MLRGLSPKVMIVVEQESNHNGGHLMDRFVEALYYYSAMFDSLESTLPQQSIERLTLEKYLFGKQIHNIVACEGSERVERHEKLQRWMKRFVEAGF 95 
                     5899******************************************************************************************* PP

            GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ++pl+++++  a++ll++++ d yr+ +++g+l+++W++rpL+svSaW+
  MA_959414g0010  96 AQLPLGYTTVRHANRLLHTYS-DSYRLLQDRGCLTICWEERPLYSVSAWQ 144
                     ********************9.66*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.0E-531144IPR005202Transcription factor GRAS
PROSITE profilePS5098527.0191125IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MLRGLSPKVM IVVEQESNHN GGHLMDRFVE ALYYYSAMFD SLESTLPQQS IERLTLEKYL  60
FGKQIHNIVA CEGSERVERH EKLQRWMKRF VEAGFAQLPL GYTTVRHANR LLHTYSDSYR  120
LLQDRGCLTI CWEERPLYSV SAWQSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-251143237378Protein SCARECROW
5b3h_A9e-261143236377Protein SCARECROW
5b3h_D9e-261143236377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389853.18e-60scarecrow-like protein 3
RefseqXP_024389854.18e-60scarecrow-like protein 3
RefseqXP_024389855.18e-60scarecrow-like protein 3
RefseqXP_024389856.18e-60scarecrow-like protein 3
RefseqXP_024389857.18e-60scarecrow-like protein 3
SwissprotQ9LPR82e-51SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2K1JV702e-58A0A2K1JV70_PHYPA; Uncharacterized protein
TrEMBLA9SHQ02e-58A9SHQ0_PHYPA; GRS2 GRAS-type E3 ubiquitin ligase protein
STRINGPP1S80_27V6.13e-59(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-54scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]