PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_96029g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 698aa    MW: 77604.6 Da    PI: 5.7063
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_96029g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2491.8e-763906582285
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++Ll++ + v+ ++le aqa+Larl++ +sp+g+++qR++ yf+eAL        +++    + s  s+ + +++++a k fse+sPi+ f+++t
  MA_96029g0010 390 LQQLLDATKYVELNSLEIAQAILARLNQYVSPRGKALQRATYYFKEALGGLR-P-LQQTN---SKSYLSPLQLVHKINACKNFSEISPIPYFANFT 480
                    589*********************************************8632.2.23344...44444444589********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                    aNq +lea+e+ +++HiiDfd++ G+QW+++lq++a Rp+gpp lR+T+vg     ++ e++ ++e+L  fAe+l++pf f+v+   + edl+ ++
  MA_96029g0010 481 ANQVLLEALETVDKIHIIDFDMGLGGQWASFLQEIALRPGGPPALRLTAVGY----ESMEMHLIRENLCTFAENLNIPFTFQVVEIPQNEDLNHSM 572
                    ****************************************************....99*************************9999********* PP

           GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                    L++k+gE++aVn +l ++ ll ++ s++    ++L+l+++l+Pk+vvvv++e +  ++sF+++fleal++y+ lf+slea  + + ++  ++
  MA_96029g0010 573 LNLKEGETIAVNYSLGMQGLL-SKDSIA----SILHLINRLRPKIVVVVDNENEQAGSSFAQKFLEALHFYALLFESLEAV-HMNMDTIEMI 658
                    ********************9.444444....5*********************************************876.3333444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.719363698IPR005202Transcription factor GRAS
PfamPF035146.2E-74390658IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MTEAVGASCK VPTVAHFNPL CKLRTSGVIV VARAPKTPIL LNTETRPPLL NLKLVQSNSI  60
PAQTTNKRPY VRSEYQSEPT SVLDIRSPSP TSTLSVSFGG STDGGFFREN ACDGQLLDCI  120
GVMDSKDGGS WQLQNVIRND NGFQVPETET VNVNPNVSMG MEYLENILLQ SPESNNNSQI  180
PCLMGEPCLM GSEYPLHGIK AEEAVLQQTQ FHEAADSQFS EFLCVNSDIN SFTFYGDNGG  240
HTLSPFALNP PSTAVFPPSS ALFTPNIHGP NPPPLSFAPD FKPFKVPMDE KHPELQLPYG  300
ANPSYPEKNV VFPMPAAPRG HMGVAHEGFP EFEKSLHWQQ IQQREFQPAW KTMINRGVRD  360
PLFPPVKQEW SPRTHQGKVD LDEVQKSAIL QQLLDATKYV ELNSLEIAQA ILARLNQYVS  420
PRGKALQRAT YYFKEALGGL RPLQQTNSKS YLSPLQLVHK INACKNFSEI SPIPYFANFT  480
ANQVLLEALE TVDKIHIIDF DMGLGGQWAS FLQEIALRPG GPPALRLTAV GYESMEMHLI  540
RENLCTFAEN LNIPFTFQVV EIPQNEDLNH SMLNLKEGET IAVNYSLGMQ GLLSKDSIAS  600
ILHLINRLRP KIVVVVDNEN EQAGSSFAQK FLEALHFYAL LFESLEAVHM NMDTIEMIEK  660
SSRNKFSSLV GNDKFLSRSL LGMLIMLFNH VLTMCLVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3640064930281Protein SCARECROW
5b3h_A3e-3640064929280Protein SCARECROW
5b3h_D3e-3640064929280Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7110550.0KJ711055.1 Pinus tabuliformis clone PtHAM2 HAM2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M6Y20.0A0A0K0M6Y2_PINTB; HAM2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-52GRAS family protein