PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_960494g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bZIP

Protein Properties

Length: 232aa MW: 25538.9 Da PI: 9.7531

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_960494g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.8	5.5e-14	30	77	10	57
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 k +NRe+ArrsR+RK+a + Le v++L eN++L k+ e++++++ MA_960494g0010 30 KLSNRESARRSRRRKQAHLNDLEIQVAQLRVENSSLFKRFTEINQKYS 77 679************************************999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	4.0E-11	30	76	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.38E-10	30	75	No hit	No description
SMART	SM00338	8.5E-9	30	85	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	30	43	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	30	75	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-9	31	76	No hit	No description
Pfam	PF12498	1.1E-15	92	208	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MIYSQLSIVE IAIIVDLFNV SMSFFMGGGK LSNRESARRS RRRKQAHLND LEIQVAQLRV 60 ENSSLFKRFT EINQKYSGAS VDNRVLKSDV EALRAKVKMV ESMVPKAATA GFPFQNTSQV 120 QSAVSLRYTT GIFDSPATNV LQGEDGLYMN TAQSTGTGGS SLSCAISDMN QQNKELQIQH 180 TGSKMGRTPS MQRVASLEHL QKRIRGGITC GSMPWGGAWD VDGSQVMEHS EH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	44	RRSRRRKQ
2	39	44	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT113584	0.0	BT113584.1 Picea glauca clone GQ03414_B24 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011621614.1	4e-41	light-inducible protein CPRF2 isoform X1
Swissprot	Q99090	5e-35	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A0C9QWW3	2e-87	A0A0C9QWW3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_2503_1784 transcribed RNA sequence
STRING	ERN01458	7e-39	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1839	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	1e-31	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]