PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_962483g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 73aa    MW: 8551.29 Da    PI: 4.0835
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_962483g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-102464143
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                     ++ ++++E++l+ ++ ++lG + W++Ia +++ gRt++++  +
   MA_962483g0010 24 KMVFSEDEEDLISRLYNLLGQR-WALIAGRIP-GRTAEEIEKY 64
                     5789*****************9.*********.*****99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-62371IPR001005SANT/Myb domain
PfamPF002491.4E-92464IPR001005SANT/Myb domain
SuperFamilySSF466892.14E-72565IPR009057Homeodomain-like
CDDcd001676.00E-72765No hitNo description
Gene3DG3DSA:1.10.10.604.0E-112764IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MSDMDRSSSE DSVDSQDDVN ENYKMVFSED EEDLISRLYN LLGQRWALIA GRIPGRTAEE  60
IEKYCSRRYS SEY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1120561e-121BT112056.1 Picea glauca clone GQ03309_F08 mRNA sequence.
GenBankEF6785471e-121EF678547.1 Picea sitchensis clone WS02926_L15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923911.16e-28transcription factor CPC
TrEMBLB8LRL33e-45B8LRL3_PICSI; Uncharacterized protein
STRINGXP_010267757.15e-27(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3921825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.16e-17MYB_related family protein