PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_97411g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 211aa MW: 23092.8 Da PI: 5.2274

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_97411g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.3	2.1e-37	7	104	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf++e+ + +f ++hk+FGasn +k+l +lp ++r da+ s++yeAear++dPvyG+v++i++lqqq+++lk +l MA_97411g0010 7 PCGACKFLRRKCVKGCVYAPYFCSEEmgAPHFGAIHKVFGASNFSKMLMHLPIQQRYDAVVSVLYEAEARLQDPVYGCVSHINALQQQVANLKRKL 102 7*********************995569*************************************************************999 PP DUF260 95 al 96 a+ MA_97411g0010 103 AV 104 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.281	6	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-35	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MGGGGAPCGA CKFLRRKCVK GCVYAPYFCS EEMGAPHFGA IHKVFGASNF SKMLMHLPIQ 60 QRYDAVVSVL YEAEARLQDP VYGCVSHINA LQQQVANLKR KLAVGYAQLA ACSNSDGASV 120 SLEYRYGMQS EMPSLTSNSN SSSPYDQQYL NPWGHPQLIR SDNVAIDSYI EEASEEEGSW 180 NNFSVCMQGG NHPLPTAQET NVFQDAETLS E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-39	3	122	7	126	LOB family transfactor Ramosa2.1
5ly0_B	6e-39	3	122	7	126	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021814837.1	2e-51	LOB domain-containing protein 29-like
Swissprot	Q9M2J7	2e-48	LBD29_ARATH; LOB domain-containing protein 29
TrEMBL	A0A498J1I9	1e-49	A0A498J1I9_MALDO; Uncharacterized protein
STRING	XP_008235796.1	9e-51	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP405	15	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	7e-50	lateral organ boundaries-domain 29

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]