PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_9826431g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 182aa    MW: 20833.8 Da    PI: 5.6833
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_9826431g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS219.81.4e-671181193373
             GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                      +L+++p+EalaVn+++qlh++ldesvs++++rd++L +vksl+Pkvv+v+eqe+++n+++Fl +f+e l+yys++fdsl+a+l+res++r++vE
  MA_9826431g0010   1 MLNINPDEALAVNFAFQLHHMLDESVSTKNPRDRLLMMVKSLNPKVVTVAEQEVKTNTAPFLPQFMEVLNYYSSVFDSLDATLSRESRDRVNVE 94 
                      699******************************************************************************************* PP

             GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +++l+r+ivn++aceg+er+er e ++kWr+r+++ GF+++pls ++ +++k+ll++ + + y+ +ee g++++gW dr L+++SaW
  MA_9826431g0010  95 KQCLARDIVNIIACEGEERIERYEVAGKWRARMTMEGFSAYPLSANVKDTVKSLLHQSYCNSYKTNEEGGTMYFGWLDRILIAASAW 181
                      ***********************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.0791162IPR005202Transcription factor GRAS
PfamPF035144.8E-651181IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MLNINPDEAL AVNFAFQLHH MLDESVSTKN PRDRLLMMVK SLNPKVVTVA EQEVKTNTAP  60
FLPQFMEVLN YYSSVFDSLD ATLSRESRDR VNVEKQCLAR DIVNIIACEG EERIERYEVA  120
GKWRARMTME GFSAYPLSAN VKDTVKSLLH QSYCNSYKTN EEGGTMYFGW LDRILIAASA  180
WH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-284182197375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1064120.0BT106412.1 Picea glauca clone GQ03001_C01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526667.12e-90scarecrow-like protein 1
RefseqXP_003526668.12e-90scarecrow-like protein 1
RefseqXP_014631848.12e-90scarecrow-like protein 1
RefseqXP_014631849.12e-90scarecrow-like protein 1
RefseqXP_014631850.12e-90scarecrow-like protein 1
RefseqXP_028235982.12e-90scarecrow-like protein 1
RefseqXP_028235983.12e-90scarecrow-like protein 1
RefseqXP_028235984.12e-90scarecrow-like protein 1
RefseqXP_028235985.12e-90scarecrow-like protein 1
RefseqXP_028235986.12e-90scarecrow-like protein 1
SwissprotQ9SDQ39e-83SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0B4U7X11e-119A0A0B4U7X1_PINRA; SCL7 (Fragment)
STRINGGLYMA06G12701.16e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1080229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.14e-85SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]