PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_9896333g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

GRAS

Protein Properties

Length: 106aa MW: 12258.2 Da PI: 5.2105

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_9896333g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	115.4	7.2e-36	2	90	231	319
GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 ksl+Pkvv+vveqe+++n+++Fl rf+e ++yys++f+sl+a+l+res +r++vE+++l+r+ivn++aceg+er+er e +kWr+r+ MA_9896333g0010 2 AKSLNPKVVTVVEQEVNTNTAPFLPRFMEVINYYSSVFESLDATLSRESIDRVNVEKKCLARDIVNIIACEGEERIERYEVTGKWRARM 90 79**************************************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.358	1	106	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-33	2	90	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MAKSLNPKVV TVVEQEVNTN TAPFLPRFME VINYYSSVFE SLDATLSRES IDRVNVEKKC 60 LARDIVNIIA CEGEERIERY EVTGKWRARM LWQDLVCILS VLMSRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-16	1	92	228	320	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT106412	1e-156	BT106412.1 Picea glauca clone GQ03001_C01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302201.2	4e-48	scarecrow-like protein 1
Refseq	XP_024450876.1	4e-48	scarecrow-like protein 1
Refseq	XP_024450877.1	4e-48	scarecrow-like protein 1
Swissprot	Q9SDQ3	4e-45	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A0B4U7X1	3e-51	A0A0B4U7X1_PINRA; SCL7 (Fragment)
STRING	POPTR_0002s07430.1	1e-47	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP10802	2	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	2e-37	SCARECROW-like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]