PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000023799

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

ZF-HD

Protein Properties

Length: 198aa MW: 22091.3 Da PI: 6.6529

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000023799	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.6	1.3e-32	64	119	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhA+++Ggha+DGCgEf+++ g+egt++alkCaAC+CHRnFHR+e+e MDP0000023799 64 MVRYRECLKNHAVTIGGHALDGCGEFLSA-GDEGTIDALKCAACNCHRNFHRKESEG 119 79************************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.6E-29	65	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-23	66	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.3E-29	66	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.049	67	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.82E-15	130	197	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.1E-24	138	192	IPR006455	Homeodomain, ZF-HD class
Gene3D	G3DSA:1.10.10.60	5.6E-26	141	197	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MEFDEHEEQD EEMEMQAAPP GYASVAESSR PKMGPAGEET VSSARKRGTA AAPNSTTTTT 60 LATMVRYREC LKNHAVTIGG HALDGCGEFL SAGDEGTIDA LKCAACNCHR NFHRKESEGE 120 LIHHHQGAGX ALHHHHQHQF SSFTQEQKEK MLEFAEKVGW RIQKHDEAAI EEFCGETGVK 180 RHVFKVWMHN NKHTLGKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-23	141	194	22	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010272957.1	2e-72	PREDICTED: zinc-finger homeodomain protein 1-like
Swissprot	Q9SB61	1e-54	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A314XKB3	2e-83	A0A314XKB3_PRUYE; Zinc-finger homeodomain protein 2
STRING	XP_010272957.1	6e-72	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60480.1	4e-33	homeobox protein 26

Link Out ? help Back to Top
Phytozome	MDP0000023799

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]