PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000097759
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 247aa    MW: 27845.3 Da    PI: 10.0431
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000097759genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.72.6e-1236120186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergfe..rspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W+++ +laL +a  ++  +l+rg l++++W+ev++++   + +g +  ++ +qCk++++ l+k+yk +k   +       st+p++++l+
  MDP0000097759  36 CWSEDATLALTTAWGDRYLHLNRGILRQKDWKEVADAVnshQNGGAKpfKTDVQCKNRIDTLKKKYKLEKSKPGP------STWPFYRRLH 120
                    7*************************************88733444322699***************99998886......68*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-2435122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
DNSHSQSLSX PPRHPNPYLS MDRPTRTHAP AGRDDCWSED ATLALTTAWG DRYLHLNRGI  60
LRQKDWKEVA DAVNSHQNGG AKPFKTDVQC KNRIDTLKKK YKLEKSKPGP STWPFYRRLH  120
SIICSTPSNT AGATKPNPPI LALTAKSPDP NTNPLGGSTD SSIRRDDGGD EAAVFSGGAA  180
CRELARAISK FGEMYERIEN SKRKQMMELE KQRMEFEKEL ALQRLNMFMD VQVELGKKMK  240
RPKYSHS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.223540.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374196.11e-171trihelix transcription factor ASIL2-like
TrEMBLA0A498KNU11e-170A0A498KNU1_MALDO; Uncharacterized protein
STRINGXP_008374196.11e-171(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-58sequence-specific DNA binding transcription factors