PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000119544
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 231aa    MW: 26986 Da    PI: 8.5913
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000119544genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-1972125356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k+ ++t++qle Le+ F ++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  MDP0000119544  72 KKKRLTSDQLESLERSFLEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 125
                    56679************************************************9 PP
2HD-ZIP_I/II118.82.9e-3872161291
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    kk+rl+++q+++LE+sF ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd +++e+++L++ev +L++ l
  MDP0000119544  72 KKKRLTSDQLESLERSFLEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLEHLYDALKQEYDVVSKEKHKLQEEVMKLKTIL 161
                    9****************9999*****************************************************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.84E-1952129IPR009057Homeodomain-like
PROSITE profilePS5007116.97367127IPR001356Homeobox domain
SMARTSM003892.5E-1769131IPR001356Homeobox domain
PfamPF000461.7E-1672125IPR001356Homeobox domain
CDDcd000861.05E-1572128No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2074134IPR009057Homeodomain-like
PRINTSPR000314.0E-598107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000314.0E-5107123IPR000047Helix-turn-helix motif
PfamPF021832.3E-7127161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDWNTNLRHH VSRPEPSFGF LYNYNCYDHH PPGMEMKHQA MISETSSQGG LVPGMXDRNN  60
HQSSYGCSSQ DKKKRLTSDQ LESLERSFLE EIKLDPDRKM KLSRELGLQP RQIAVWFQNR  120
RARWKAKQLE HLYDALKQEY DVVSKEKHKL QEEVMKLKTI LRDEVARKQV STGYTEISGE  180
ETVESTSVSI RSANKARGTN QHKIAEYNYL YNVEEYNPVS PPFWGNLPSY P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARWKAKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387470.21e-174putative homeobox-leucine zipper protein ATHB-51 isoform X1
SwissprotQ9LZR01e-53ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A498ICZ71e-173A0A498ICZ7_MALDO; Uncharacterized protein
STRINGXP_008350329.11e-173(Malus domestica)
STRINGXP_008387470.11e-173(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-49homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]