PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000120576
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 294aa    MW: 34298.6 Da    PI: 7.8276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000120576genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.3e-07148186948
                      HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +++l+++vkq+  + W  I +++   R +kqc++rw+++l
    MDP0000120576 148 HKKLIKLVKQYEVRKWPHIVKKLV-VRARKQCRERWHNHL 186
                      89**********************.9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF059704.6E-373151IPR010285DNA helicase Pif1-like
PROSITE profilePS5129411.23145190IPR017930Myb domain
CDDcd001675.19E-7148186No hitNo description
Gene3DG3DSA:1.10.10.607.9E-12149191IPR009057Homeodomain-like
SuperFamilySSF466894.29E-9149192IPR009057Homeodomain-like
PfamPF139218.2E-8149191No hitNo description
PfamPF047274.4E-8224286IPR006816ELMO domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006281Biological ProcessDNA repair
GO:0003677Molecular FunctionDNA binding
GO:0003678Molecular FunctionDNA helicase activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MMLSQKGLNN DQKKKLADFA TWILQIGDGE IGDTLDSNDK DTCWIEIPDD LLIHSYSDHV  60
HSILSATYPD FENNFASFEY LREQAIITPK NNTVTEINDY AIDLLPGQKR IYLNSDSLYS  120
SFENFENLSI MYPTEFLNTL EFNGLPSHKK LIKLVKQYEV RKWPHIVKKL VVRARKQCRE  180
RWHNHLHPHI KVWVVMEWMN QNYAVIICTC SIHIVQCMFG LPGRKYGFVS LENLMFFAKT  240
FSNIIPVSIE KAGRKASSWE YPFIVASVNI MFMVVQILDL ETNKCQRCSL RSKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457383.14e-52PREDICTED: uncharacterized protein LOC101301620
RefseqXP_018500388.12e-50PREDICTED: uncharacterized protein LOC103936728 isoform X1
TrEMBLA0A251NRF22e-59A0A251NRF2_PRUPE; ATP-dependent DNA helicase
TrEMBLM5XLN59e-57M5XLN5_PRUPE; ATP-dependent DNA helicase (Fragment)
STRINGEMJ224232e-57(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-12myb domain protein 119