PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000121258
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 524aa    MW: 59715.1 Da    PI: 5.8469
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000121258genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.93.8e-12143185244
                    XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                    + +k++rr+++NReAAr+sR RKka++++Le+   +L +  ++
  MDP0000121258 143 PTDKVQRRLAQNREAARKSRMRKKAYVQQLETSRXKLIQLEQE 185
                    579****************************987777766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.2E-9138187No hitNo description
SMARTSM003381.2E-7142205IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.105144186IPR004827Basic-leucine zipper domain
PfamPF001709.3E-9144179IPR004827Basic-leucine zipper domain
CDDcd147086.33E-21146198No hitNo description
SuperFamilySSF579591.13E-7146185No hitNo description
PROSITE patternPS000360149164IPR004827Basic-leucine zipper domain
PfamPF141444.2E-28232307IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MEKMFELGKQ AETIDREQQQ QQQXQQLEPE FSIPNPYLCF NSDIHTRGNW EEMIGFREKV  60
EEEEEEKSMN SPSTQFVTSR RMGVFEPIHQ ISMWDESFRS SGNFNASASM ILDVDAKLDN  120
QSEDASHGIL GPSSKYDQEA TKPTDKVQRR LAQNREAARK SRMRKKAYVQ QLETSRXKLI  180
QLEQELDRVX QQGVYIGGGL DTNPLGFSGT INSGITTFEM EYGHWVEEQN RQICELGSAL  240
DARISDVELR FLVDNGMSHY FELFSMKSTA AKADVFYVMS GMWKTSAERF FSWIGGFRPS  300
ELLKVLQPHL DPLTDQQLLD VHNLRQSCQQ AEDALSQGMD KLQHTLAETV AAGQLGEGSY  360
VPQMAXAMER LEALVSFVTQ ADHLRRETLQ QMSRILTTRQ AARGLLALGG YFHRLRALSS  420
LWAARPQAIH LMMDICFQWG WDARFQVRWR NFQTSAGIGR EVFYLQLVCA ISPVCELLKT  480
NLWCXAKVAG ESLLATTKVT FRXAAEKQIF EQSPAPNRNP LPTP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008352612.20.0transcription factor TGA4-like isoform X2
SwissprotQ391620.0TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A498I1C80.0A0A498I1C8_MALDO; Uncharacterized protein
STRINGXP_008352612.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.20.0TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]