PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000121411

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 303aa MW: 33800.2 Da PI: 4.8935

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000121411	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.8	9.9e-38	39	93	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ MDP0000121411 39 PNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 93 58***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	32	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-32	39	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.668	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MFIAPSVKQI LQCPPSGQEQ FMMMEMKTPW NKSHIEIAPN CPRCASSNTK FCYYNNYSLS 60 QPRYFCKGCR RYWTKGGSLR NVPVGGGCRK NRRGKAARLS QADRGSLSYF QHHNSSTTTE 120 DDLAGNTQPG GSNVPDIDLA VVFAKFLNHN STTPDGHDHD PNLVISSSAL NDRDGSHNSS 180 KAADDLVEAV GHHYLLEGHQ SQEENVQTFM GINHNDDMNI HEFELQGLLG DDEQVVQDVF 240 WSDDATTSLT SSTASFTWQP MMDLQELDCS LPSDDDQMKI STNLCGDNWS SFEFSGFEVF 300 SRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008373222.1	0.0	dof zinc finger protein DOF1.2-like
TrEMBL	A0A498IQK3	0.0	A0A498IQK3_MALDO; Uncharacterized protein
STRING	XP_008343605.1	0.0	(Malus domestica)
STRING	XP_008373222.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	2e-45	Dof family protein

Link Out ? help Back to Top
Phytozome	MDP0000121411