PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000121821

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 157aa MW: 17816.2 Da PI: 6.8577

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000121821	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.1	1.9e-40	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaC++lrr+C++dCvlapyfp+++p++fa+vhk+FGa n++k+l++lp + re+a++s++yeA r++dPvyG+v++i++lq+++ ++++e+ + MDP0000121821 8 RCAACRFLRRRCPQDCVLAPYFPSSNPERFACVHKIFGAGNITKMLEQLPVHLREAAADSMFYEASLRVEDPVYGCVRIISQLQHHILEAQSEILK 103 6*******************************************************************************************9988 PP DUF260 97 lkee 100 ++ + MDP0000121821 104 TNGQ 107 7765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.717	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.4E-40	8	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MISNNPTRCA ACRFLRRRCP QDCVLAPYFP SSNPERFACV HKIFGAGNIT KMLEQLPVHL 60 REAAADSMFY EASLRVEDPV YGCVRIISQL QHHILEAQSE ILKTNGQIAS YIAQQQLHQQ 120 QQNVVHGASY QQDMQISEYS GVGWDVQTLA NDSYFHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	9	111	12	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	9	111	12	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008380285.1	1e-116	LOB domain-containing protein 24-like
Swissprot	P59468	4e-46	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A498HEA6	3e-85	A0A498HEA6_MALDO; Uncharacterized protein
STRING	XP_008380285.1	1e-115	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-36	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	MDP0000121821