PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000122269

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 301aa MW: 33472.7 Da PI: 4.476

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000122269	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	106.8	1.5e-33	48	133	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m + g++rs k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a MDP0000122269 48 RWPKAEVLALIKLRSGLESRYQDAGPKGPLWEEISAGMGRMGYNRSCKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 133 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.969	41	105	IPR017877	Myb-like domain
SMART	SM00717	6.2E-4	45	107	IPR001005	SANT/Myb domain
Pfam	PF13837	5.0E-23	47	134	No hit	No description
CDD	cd12203	7.83E-30	48	112	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MQQVRHVQQT QAVQPVMAVP EQQVPPTAQE NIGSGGGGGS SEPASSSRWP KAEVLALIKL 60 RSGLESRYQD AGPKGPLWEE ISAGMGRMGY NRSCKRCKEK WENINKYFKK VKESNKKRPE 120 DAKTCPYFHE LDALYRKRVL GGGSTGGSSS SLGNRLEQQP QQPEQEQVVA GSENKNADDS 180 TDVETNLRAN LFGEGTEEAA KKPEDIVKEL MEVHDHQQVL QQGHPQHFGV DDCNRVEEAD 240 SDNLMDQEEE DMEDEDMDEE DDEETEQERK MAYKIEFQKQ NTGPSSNGGG NGAPSFLAMV 300 Q

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.23033	1e-150	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008360728.2	1e-153	trihelix transcription factor GTL1-like isoform X1
TrEMBL	A0A498I6X3	1e-152	A0A498I6X3_MALDO; Uncharacterized protein
STRING	XP_008351694.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	4e-50	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000122269