PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000123745

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 260aa MW: 29899.9 Da PI: 9.9063

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000123745	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.4	8e-31	42	129	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+++ ++s r+g++++r++vC+keg+r+++ k+ +++r++ra tr gCka+++vkk+k+gkw+vt++ +eHnH+l+ MDP0000123745 42 FYDAYATQVGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKTRAKR-TENRKPRAITREGCKAMIVVKKDKSGKWVVTRFIKEHNHPLV 129 9*****************************************99.9*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-29	42	129	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MSKDEDVLES SNGKDAVTSE GNSDAEPFVG MEFETEEAAK VFYDAYATQV GFIMRVDAFR 60 RSMRDGKVVW RRLVCNKEGF RKTRAKRTEN RKPRAITREG CKAMIVVKKD KSGKWVVTRF 120 IKEHNHPLVG TPANGRRSML LSQAPEFWFV DEVSRCPLLE XVTRCCHSYD REALVGERKG 180 EIKKGKGRRL ITVTDEKDLK IRELTAELQR ERKRSATYQE QLDMVLREME QHSNHLSRNI 240 DGIVQSVKEI ESKRVAPSNG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008382553.1	1e-146	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A498JVF8	1e-132	A0A498JVF8_MALDO; Uncharacterized protein
STRING	XP_008348960.1	1e-145	(Malus domestica)
STRING	XP_008382553.1	1e-145	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-85	FAR1 family protein

Link Out ? help Back to Top
Phytozome	MDP0000123745