PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000123919

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 348aa MW: 35970.2 Da PI: 7.5625

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000123919	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.1	5.5e-33	70	133	10	73
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++hTkv+gR+RRvR++a+caar+F+L++eLG+++d++ti WLl+ ++pai+++tg+++++a ++ MDP0000123919 70 DRHTKVEGRGRRVRMPATCAARIFQLTRELGHKSDGETIRWLLEHSEPAIIQATGSGTIPAIAV 133 8*******************************************************99998444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	25.84	68	122	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.1E-27	70	134	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MKSNQRQSLQ ESNELERGGD SNNTSTSGSS PSVANTPEQN FSATVLMMKE ELAGPVQQLD 60 QQGSLSMGID RHTKVEGRGR RVRMPATCAA RIFQLTRELG HKSDGETIRW LLEHSEPAII 120 QATGSGTIPA IAVSVGGALK IPTTSPARPN GEGTEIPKKR KKMRGSLGEF ADVHDQSSGL 180 APIAPMIYGG GGGGLVPMWQ IGATGAAGPF FMFPNSGTIQ NQPQLWAIPT ADSTAPIFNF 240 QPRPLSNFVS AFPAGVQVGS VGGGDGQLQA SSCSIPGGAA TGGGGSCSSS LGHSLESASG 300 TSAAASAAAA PRSATTQMLK DFSLEVYDKR ELQLMGQAAN SQTPRSES

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MKSNQRQSLQ ESNELERGGD SNNTSTSGSS PSVANTPEQN FSATVLMMKE ELAGPVQQLD  60
QQGSLSMGID RHTKVEGRGR RVRMPATCAA RIFQLTRELG HKSDGETIRW LLEHSEPAII  120
QATGSGTIPA IAVSVGGALK IPTTSPARPN GEGTEIPKKR KKMRGSLGEF ADVHDQSSGL  180
APIAPMIYGG GGGGLVPMWQ IGATGAAGPF FMFPNSGTIQ NQPQLWAIPT ADSTAPIFNF  240
QPRPLSNFVS AFPAGVQVGS VGGGDGQLQA SSCSIPGGAA TGGGGSCSSS LGHSLESASG  300
TSAAASAAAA PRSATTQMLK DFSLEVYDKR ELQLMGQAAN SQTPRSES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	161	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009341290.1	0.0	PREDICTED: transcription factor TCP19-like
Refseq	XP_009341292.1	0.0	PREDICTED: transcription factor TCP19-like
TrEMBL	A0A498KLW4	0.0	A0A498KLW4_MALDO; Uncharacterized protein
STRING	XP_009341290.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-56	TCP family protein

Link Out ? help Back to Top
Phytozome	MDP0000123919