PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000124187
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 246aa    MW: 27923.7 Da    PI: 6.8463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000124187genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035168181114
                    EEETTTTEEESSHH CS
        zf-C2H2   1 ykCpdCgksFsrks 14 
                    y+Cp C+ksF++ s
  MDP0000124187 168 YSCPVCSKSFRNMS 181
                    99********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5127013.17866130IPR017921Zinc finger, CTCHY-type
SuperFamilySSF1612458.89E-796124No hitNo description
Gene3DG3DSA:3.30.40.102.5E-14128190IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.88E-10129181No hitNo description
PfamPF146343.5E-7130175IPR001841Zinc finger, RING-type
PROSITE profilePS5008911.634131174IPR001841Zinc finger, RING-type
CDDcd001624.62E-6131177No hitNo description
SMARTSM001841.0E-6131173IPR001841Zinc finger, RING-type
PfamPF145991.3E-27179236No hitNo description
Gene3DG3DSA:2.20.28.102.1E-20202240IPR004039Rubredoxin-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDGGFEPQVS IDDDHSHQKV NSLTDMESGN FGHCHNEAKQ NSLEVDPFDR HNVPRPTISF  60
APCATPNKMF SNTVSSVGFA WETIFAPNAS SLTMIIGGGE NVFHCNKCGC CYSKAMKDSH  120
NCVENVMHHN CPVCFEFLFD TREDITVLRC GHNIHLECVK EMERHYQYSC PVCSKSFRNM  180
SRVWEKLDEE VAGTPMPQKY QNKMVWILCN DCGETSQVNF HIVAHKCLKC KSYNTRKTQR  240
ASVILV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2k2d_A4e-17176238769RING finger and CHY zinc finger domain-containing protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.13916e-87root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, and anthers and stigma of open flowers. {ECO:0000269|PubMed:26508764}.
Functional Description ? help Back to Top
Source Description
UniProtPossesses E3 ubiquitin-protein ligase activity in vitro. Mediates mainly 'Lys-48'-linked polyubiquitination. Promotes abscisic acid (ABA)-induced stomatal closure, reactive oxygen species (ROS) production and drought tolerance (PubMed:26508764). Involved in the regulation of stomatal aperture (PubMed:25002225). {ECO:0000269|PubMed:25002225, ECO:0000269|PubMed:26508764}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during sucrose starvation. Repressed by sucrose (PubMed:17217462). Induced by cold, drought and salt stresses, and abscisic acid (ABA) (PubMed:26508764). {ECO:0000269|PubMed:17217462, ECO:0000269|PubMed:26508764}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946598.11e-120E3 ubiquitin-protein ligase RZFP34-like
SwissprotQ9FFB61e-76ZFP34_ARATH; E3 ubiquitin-protein ligase RZFP34
TrEMBLA0A498K1D01e-139A0A498K1D0_MALDO; Uncharacterized protein
STRINGXP_009349743.11e-116(Pyrus x bretschneideri)
Publications ? help Back to Top
  1. Hsu KH, et al.
    Expression of a gene encoding a rice RING zinc-finger protein, OsRZFP34, enhances stomata opening.
    Plant Mol. Biol., 2014. 86(1-2): p. 125-37
    [PMID:25002225]
  2. Kunz S,Gardeström P,Pesquet E,Kleczkowski LA
    Hexokinase 1 is required for glucose-induced repression of bZIP63, At5g22920, and BT2 in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 525
    [PMID:26236323]
  3. Ding S,Zhang B,Qin F
    Arabidopsis RZFP34/CHYR1, a Ubiquitin E3 Ligase, Regulates Stomatal Movement and Drought Tolerance via SnRK2.6-Mediated Phosphorylation.
    Plant Cell, 2015. 27(11): p. 3228-44
    [PMID:26508764]