PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000124687

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 461aa MW: 51600.9 Da PI: 7.7672

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000124687	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.4	2.4e-11	260	284	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r++W+peLH++Fv+a++qLGGs+ MDP0000124687 260 KQRRCWSPELHRKFVNALQQLGGSQ 284 79*********************97 PP
2	G2-like	51	3.1e-16	350	380	26	56
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRla 56 +AtPk+i+elm+v+gLt+++vkSHLQkYR + MDP0000124687 350 VATPKQIRELMQVDGLTNDEVKSHLQKYRXH 380 7****************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-26	257	284	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.3E-8	260	290	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.02E-7	342	383	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.7E-14	343	380	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.5E-26	351	383	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MGSVPPELSL DFKPTFVPKT ISDFLKEVSM IGNVSEKLSK LDDFVKRLED EMRKIDAFKR 60 ELPLCMFLLN DAIRALKEDA MQCAAPKVQP VLEEFIPMKK DCDKNKGGSG NNNKKEKDSR 120 DKKNWMSSVQ LWNTDNYHQH PSSDSPYDRK RVSEIDSKRN EAENGVANED PFQTCRNRTG 180 GRAFMPFKGY PAFSVTPLRL EEKEELPVHG LSLLTPGIKN PKEESTSSGS RSTCGRSVSF 240 STANTQSNTR TPPQQPTSRK QRRCWSPELH RKFVNALQQL GGSQGPNDIS MNLLIERPNI 300 CCITDIHGFG IPKDELIVSL YTAYIVVVDY YTLYSPTIAV SYLRFYDIAV ATPKQIRELM 360 QVDGLTNDEV KSHLQKYRXH TRRVPGAAAA GSEKQSVGLG VLWMSQDQYM DSSKASSSQS 420 GSPQGPLQLT GTGGDDEDNE DAKSESYSWK GHIHKPGKDD V

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MGSVPPELSL DFKPTFVPKT ISDFLKEVSM IGNVSEKLSK LDDFVKRLED EMRKIDAFKR  60
ELPLCMFLLN DAIRALKEDA MQCAAPKVQP VLEEFIPMKK DCDKNKGGSG NNNKKEKDSR  120
DKKNWMSSVQ LWNTDNYHQH PSSDSPYDRK RVSEIDSKRN EAENGVANED PFQTCRNRTG  180
GRAFMPFKGY PAFSVTPLRL EEKEELPVHG LSLLTPGIKN PKEESTSSGS RSTCGRSVSF  240
STANTQSNTR TPPQQPTSRK QRRCWSPELH RKFVNALQQL GGSQGPNDIS MNLLIERPNI  300
CCITDIHGFG IPKDELIVSL YTAYIVVVDY YTLYSPTIAV SYLRFYDIAV ATPKQIRELM  360
QVDGLTNDEV KSHLQKYRXH TRRVPGAAAA GSEKQSVGLG VLWMSQDQYM DSSKASSSQS  420
GSPQGPLQLT GTGGDDEDNE DAKSESYSWK GHIHKPGKDD V

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.5438	0.0	bud\| leaf\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028957904.1	0.0	transcription factor HHO6-like
TrEMBL	A0A498JX67	0.0	A0A498JX67_MALDO; Uncharacterized protein
STRING	XP_009345969.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009345970.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1208	34	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	2e-32	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000124687