PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000124774
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 385aa    MW: 42528.6 Da    PI: 9.474
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000124774genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-1718103899
                    -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    s  l+s rl +p +f+++++g +  s  + l  +sg  W+v+l   ++ g+ +l  GW  Fv+++ ++ gDf+vF++d++ +f  +v +f++
  MDP0000124774  18 SADLSSERLKIPDRFMRHMEGRT--SGLVLLFGPSGSAWSVEL--IQQNGGLFLHHGWPAFVRDHYVECGDFLVFRYDSDLCF--TVLIFDQ 103
                    66788999********8888884..4489999***********..888889**************************999999..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-238106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-229106IPR015300DNA-binding pseudobarrel domain
CDDcd100173.95E-1911102No hitNo description
PROSITE profilePS5086314.12811104IPR003340B3 DNA binding domain
SMARTSM010191.0E-1113104IPR003340B3 DNA binding domain
PfamPF023621.1E-1518103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-11227300IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-10227300IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-7232300No hitNo description
PROSITE profilePS508636.865234330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAKEARNVRS PHFFAFYSAD LSSERLKIPD RFMRHMEGRT SGLVLLFGPS GSAWSVELIQ  60
QNGGLFLHHG WPAFVRDHYV ECGDFLVFRY DSDLCFTVLI FDQSACEKEA AFRFGYGQDS  120
SNFEKCMXVG RKRGMEEAAS SGNKPVDGAX KKMRHGLSQL QSECIDEGQE EATCSKETNP  180
HENPGLDVVP NAAKASIQNV CGKGDGLNVN GRVCMQMSSA HEVAPVFSSS NPYFVRIIKS  240
FNISGSYTLN IPYKFSVAHL PNCKVKIVLQ NWKGESWTVN SVPSTRVHTS HTLCGGWMAF  300
GETSSWLSPG LAVTTHKTIK GLSKKIKGNS PKVHSKSIRE IADKLSSKMY QDAAFINDTR  360
KYGSSSRSLT KVALSQSKVA SKKLX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.107030.0bud| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365640.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A498J6W40.0A0A498J6W4_MALDO; Uncharacterized protein
STRINGXP_008357222.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-14B3 family protein