PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000125673
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 229aa    MW: 24422.2 Da    PI: 6.5057
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000125673genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-172170255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  MDP0000125673 21 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 70
                   69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-372184IPR001471AP2/ERF domain
PROSITE profilePS5103221.972178IPR001471AP2/ERF domain
CDDcd000181.49E-262280No hitNo description
SuperFamilySSF541711.5E-202279IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-292279IPR001471AP2/ERF domain
PfamPF008471.0E-102270IPR001471AP2/ERF domain
PRINTSPR003673.2E-112233IPR001471AP2/ERF domain
PRINTSPR003673.2E-116080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEGGGGEAAN RKRAGVDNDK PYKGIRMRKW GKWVAEIREP NKRSRIWLGS YSTPVAAARA  60
YDTAVFYLRG PSARLNFPEA LPVEGGCGCG DMSAALIRKR ATEVGARVDA VETALRHHRG  120
SAAGNGDGDE IKPCFAGCVD RVDLNKMPDP ENSEVQESNW DLEELGISGS LHCCWLSVVV  180
GIRYXGDGAG GVLDDGGXGK WDALCPLSVX SPPPPXPSPX PLGHSLSQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-142078463ATERF1
3gcc_A3e-142078463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324691e-141GU732469.1 Malus x domestica AP2 domain class transcription factor (AP2D45) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340308.11e-107ethylene-responsive transcription factor ERF010
SwissprotQ9FH943e-55ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLD5L1291e-89D5L129_MALDO; AP2 domain class transcription factor
STRINGXP_008340308.11e-107(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.14e-58DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]