PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000125949
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 729aa    MW: 82905.3 Da    PI: 8.9049
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000125949genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.4e-1125113599
                    -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +p++  ++  l++p+kf++++g +   s  + l+ ++g +W+++l  r   g++++++GW +F k   L+   ++vF ++g+s+f  +v+vf+k
  MDP0000125949  25 VIPKSICTQTKLRIPNKFFRKYGDD--LSNPVFLKLPTGSEWKIEL--RIWEGEVWFGEGWPKFSKFCSLDCCHSLVFGYEGNSTF--RVSVFDK 113
                    55667777788***********988..6677***************..55555699**************************9999..9999997 PP
2B346.85.3e-152483331599
                    -EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  15 rlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ++lp k + ++   g k+++   +tl+ ++g +W+v+++  + ++ +  l+ GW eFv+ n+L++gD++v+ l+++++ e+ v +fr+
  MDP0000125949 248 SVWLPSKLCIHMrrlG-KHPG--AITLRVLDGGTWSVEMKCeKATRPKLRLQYGWTEFVRGNNLEVGDVCVLVLIDDTKLEFEVVIFRA 333
                    4789999998888743.4334..69999999********874444445**************************************997 PP
3B354.81.7e-174185021399
                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    + + +l  kf++eh +k  +  +++l+ ++gr+W vkl  +++++++ l++GW  Fv++n+L+ gD++vF l+++ ++ + v +fr+
  MDP0000125949 418 RTLQYLGAKFTKEHFLKW-NYHQVILRVSDGRTWPVKL-SKRQKNMVRLQNGWITFVQDNHLEIGDVCVFALINNIKGLMDVVIFRT 502
                    445588899*****6664.4458***************.5888889***************************99555588888886 PP
4B343.17.4e-14624696680
                    ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EE CS
             B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfv 80 
                    +++++ + + l l  kfa eh ++ +    ++l+ + gr+W vkl   ++s++   +++GW  Fv++ngL+ gD++
  MDP0000125949 624 MRPSYIQANTLNLEAKFAXEHLLNRTH-DNVILRVSGGRTWPVKL--HQYSKTvLKFQSGWMTFVQDNGLEIGDSF 696
                    4555666667***********777544.59***************..6666665899*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-1917114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-1918114IPR015300DNA-binding pseudobarrel domain
CDDcd100175.04E-1420112No hitNo description
PROSITE profilePS5086311.94221114IPR003340B3 DNA binding domain
SMARTSM010192.1E-822114IPR003340B3 DNA binding domain
PfamPF023627.6E-924113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-18227334IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-18228333IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-16233332No hitNo description
PROSITE profilePS5086311.773234334IPR003340B3 DNA binding domain
SMARTSM010191.5E-8235334IPR003340B3 DNA binding domain
PfamPF023628.2E-13247333IPR003340B3 DNA binding domain
SMARTSM010191.1E-9411503IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-18417502IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-15417501IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-17420502IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-16422501No hitNo description
PROSITE profilePS5086312.647439503IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-17612696IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-15613696IPR015300DNA-binding pseudobarrel domain
CDDcd100178.10E-12618696No hitNo description
PROSITE profilePS5086310.898619723IPR003340B3 DNA binding domain
SMARTSM010197.8E-6620714IPR003340B3 DNA binding domain
PfamPF023621.0E-10622696IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MASFHRKIHD FSSKTHLKAP HFLVVIPKSI CTQTKLRIPN KFFRKYGDDL SNPVFLKLPT  60
GSEWKIELRI WEGEVWFGEG WPKFSKFCSL DCCHSLVFGY EGNSTFRVSV FDKDFTEINY  120
PLTMPEMEET DEDDDSDNSS WDDDDDSDCV EVLDNIMSRS RKTRDKYPLS CPQPRKKHRT  180
SSTAEFASKR HGEGTSSTPK RAQTVLGRMH ASNARGKAAV ALRRATAFKS DNPSFIVPMK  240
XTYINGYSVW LPSKLCIHMR RLGKHPGAIT LRVLDGGTWS VEMKCEKATR PKLRLQYGWT  300
EFVRGNNLEV GDVCVLVLID DTKLEFEVVI FRATETAHTF SPPDVDGEQT MSQMEETDED  360
DDSIEILDXF PXCXKTKKKS PXAPQPHKKN RTCSVSTAEN RIKKFGGSSL TXKIMNRRTL  420
QYLGAKFTKE HFLKWNYHQV ILRVSDGRTW PVKLSKRQKN MVRLQNGWIT FVQDNHLEIG  480
DVCVFALINN IKGLMDVVIF RTTEAARWNL SQDVDGEKTM SETEETDEDD GCVEILDDSP  540
PCLKTKKKSP IATQPHKKNR AGSISTSENH MKKFGGSSCT KELVKRRPNQ VPRMMNPLTE  600
SGTNRALQRA RAFKSEYPCC MVVMRPSYIQ ANTLNLEAKF AXEHLLNRTH DNVILRVSGG  660
RTWPVKLHQY SKTVLKFQSG WMTFVQDNGL EIGDSFSAVE KXLIAPFHXV SKFSVGCEFL  720
SAPSGLSSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028953967.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A498HHW40.0A0A498HHW4_MALDO; Uncharacterized protein
STRINGXP_008374002.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14896412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-26B3 family protein