PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000126738
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 284aa    MW: 32712.2 Da    PI: 5.1356
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000126738genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.5e-1221112199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffk+ + +d+++ + + +p kf++++g +      + ++ +s  +W+++l  rk +g++++++GW++F +   L+ g  +v+ ++++s+f  +v +
  MDP0000126738  21 FFKIIL-NDTSRDKKIKIPPKFVTKYGDNMSX--PVFFKVPSALEWKIEL--RKWDGEVWFENGWQDFSSFYSLDYGHLLVLGYERNSKF--RVLI 109
                    556553.57777778***********988555..5***************..99999****************************99999..7777 PP

                    E-S CS
             B3  97 frk 99 
                    +++
  MDP0000126738 110 LER 112
                    665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.29E-1915113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-2016114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-1419110No hitNo description
PROSITE profilePS5086311.46220113IPR003340B3 DNA binding domain
SMARTSM010192.2E-1121113IPR003340B3 DNA binding domain
PfamPF023621.2E-922112IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-5225257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-4227251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.752231272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAFLPEEIDD RPTFPPAVPH FFKIILNDTS RDKKIKIPPK FVTKYGDNMS XPVFFKVPSA  60
LEWKIELRKW DGEVWFENGW QDFSSFYSLD YGHLLVLGYE RNSKFRVLIL ERSCTEIEYP  120
LQNTAEKTDE DEKSGDDSHD ISXHESGDDL DVGSVEIXEN HTPCPRKTRE KSLLKPIGKV  180
LSSTSQEKQT KFTCLSRNTL TGLLVMSSFG FWVEELGVSN SNNTTPEDCR LLGGWKQFVR  240
ENSLAIGDEC WIGFVRPPQQ PSWSCLRLAE TLEKREIPRW PNKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170PRKTREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018507389.11e-121PREDICTED: B3 domain-containing protein At3g18960-like isoform X2
TrEMBLA0A498HUW01e-110A0A498HUW0_MALDO; Uncharacterized protein
STRINGXP_009376477.11e-119(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.15e-25B3 family protein