PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000127054
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 179aa    MW: 20460.9 Da    PI: 9.1667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000127054genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18755254
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                   +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  MDP0000127054  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                   69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.53E-35666No hitNo description
Gene3DG3DSA:3.30.730.101.7E-34764IPR001471AP2/ERF domain
SMARTSM003801.3E-41770IPR001471AP2/ERF domain
PfamPF008471.9E-11756IPR001471AP2/ERF domain
PROSITE profilePS5103221.14764IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-21766IPR016177DNA-binding domain
PRINTSPR003672.8E-11819IPR001471AP2/ERF domain
PRINTSPR003672.8E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFPYNPNAS QSSASKLLSA TLTAKLHRCY MASLQMTKTS LQEPKKPKTL VSSGAKMPEM  120
IRPEIQQGAE ENWIVREVKX ESSSQQFKPL EDDHIEQMIE ELLHYGSIEL CSVVPPXPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-18871670ATERF1
3gcc_A5e-18871670ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.114790.0cell culture| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324450.0GU732445.1 Malus x domestica AP2 domain class transcription factor (AP2D21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378704.11e-130ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW54e-81ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A498HUD11e-129A0A498HUD1_MALDO; Uncharacterized protein
STRINGXP_008343757.11e-130(Malus domestica)
STRINGXP_008378704.11e-130(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-60ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]