PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000127640

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Protein Properties

Length: 987aa MW: 108730 Da PI: 6.4692

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000127640	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.2	3.7e-19	422	522	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++l MDP0000127640 422 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPIRIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PGGRL 515 99************************555556677***********99899999999.*******************987.89999 PP EEEEE-S CS B3 93 vvkvfrk 99 v++++++ MDP0000127640 516 VIGFRKA 522 9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.7E-29	418	523	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.5E-21	419	522	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.16E-24	420	521	No hit	No description
Pfam	PF02362	1.2E-16	422	522	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.18	422	523	IPR003340	B3 DNA binding domain
SMART	SM01019	2.4E-23	422	523	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.864	685	735	IPR011124	Zinc finger, CW-type
Pfam	PF07496	4.7E-11	690	732	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence Send to blast
MLGSGSCSEN DNPDPKPTPS GETGWRDGLS TVDAQSLGLY LYASDTPTSS LYRARRRTLC 60 RFWAVSRVGF GEFEFGAMDS KICMNPSCRT ANTHEWKKGW PLRTGGFAHL CYKCGCSVVD 120 TELGGHYGIW VVVLDVGVEY ENSVYCNTFH SGETGWRDCN LCHKPLHCGC IVSETLYECL 180 DFGGIGCIGC ASQPRVIQND DVLNGFGGLK ISNSGDQQST VPQNGALSDT ANEGKLLQLC 240 QVMEANESNL SSQSQRGDIN VSPVQSKQEE VTYPKGEVGP GFSSITRPSI GSLTFAKPDN 300 GRIMIEVKDM NNPSSEPSLS MTLGGPSATP NFAQPFTGGI LEGRDKSKMP SSFQQGQKIR 360 PILPRPLRPP SPVHHVRVAR PPSEGRGKSQ LLPRYWPRIT DQELQKLAGE YPYLNSTIVP 420 LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQSEGLPIR IQDVKGNEWT FQFRFWPNNN 480 SRMYVLEGVT PCIQSMQLQA GDTVTFSRID PGGRLVIGFR KASRSLDMQD PQTSFLPNGT 540 PGETSCPSVV ENLVTGSGQS SIYQTNTGSK DPYLNALSGH LHLAXGDTSL HNCENHSHLT 600 SEDLLQRPVS NSDKKRARNI GPKSKRLLLH REDVLELRLT WEEAQDLLRP PPSVKPSIVT 660 IEDHEFEEYD EPPVFGKRSL FIAESERQEQ WAQCDDCFKW RRLPVDVFLP PKWTCSENSW 720 DMNRCSCSAP EEVSQKELDN LLRPSIDLKK RRIVVNHNEA QEXEPSGLDA LASASAAILG 780 DSVDYSGEQS LGATTRHPRH RPGCTCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLMM 840 NKRKRKSERE AENAQRDNND HKDESEMNGT STEIELHRNH SSENGGSSEK RIEADVAESS 900 CAGQIDLNCE PKHNYVQVSG LNLLRLADAV ARQPVNNGTR ESFLTNKTCE PQAGLGSSLL 960 AQETAETDRL MCNEGSLSSV AALDFGG

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence Send to blast

MLGSGSCSEN DNPDPKPTPS GETGWRDGLS TVDAQSLGLY LYASDTPTSS LYRARRRTLC  60
RFWAVSRVGF GEFEFGAMDS KICMNPSCRT ANTHEWKKGW PLRTGGFAHL CYKCGCSVVD  120
TELGGHYGIW VVVLDVGVEY ENSVYCNTFH SGETGWRDCN LCHKPLHCGC IVSETLYECL  180
DFGGIGCIGC ASQPRVIQND DVLNGFGGLK ISNSGDQQST VPQNGALSDT ANEGKLLQLC  240
QVMEANESNL SSQSQRGDIN VSPVQSKQEE VTYPKGEVGP GFSSITRPSI GSLTFAKPDN  300
GRIMIEVKDM NNPSSEPSLS MTLGGPSATP NFAQPFTGGI LEGRDKSKMP SSFQQGQKIR  360
PILPRPLRPP SPVHHVRVAR PPSEGRGKSQ LLPRYWPRIT DQELQKLAGE YPYLNSTIVP  420
LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQSEGLPIR IQDVKGNEWT FQFRFWPNNN  480
SRMYVLEGVT PCIQSMQLQA GDTVTFSRID PGGRLVIGFR KASRSLDMQD PQTSFLPNGT  540
PGETSCPSVV ENLVTGSGQS SIYQTNTGSK DPYLNALSGH LHLAXGDTSL HNCENHSHLT  600
SEDLLQRPVS NSDKKRARNI GPKSKRLLLH REDVLELRLT WEEAQDLLRP PPSVKPSIVT  660
IEDHEFEEYD EPPVFGKRSL FIAESERQEQ WAQCDDCFKW RRLPVDVFLP PKWTCSENSW  720
DMNRCSCSAP EEVSQKELDN LLRPSIDLKK RRIVVNHNEA QEXEPSGLDA LASASAAILG  780
DSVDYSGEQS LGATTRHPRH RPGCTCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLMM  840
NKRKRKSERE AENAQRDNND HKDESEMNGT STEIELHRNH SSENGGSSEK RIEADVAESS  900
CAGQIDLNCE PKHNYVQVSG LNLLRLADAV ARQPVNNGTR ESFLTNKTCE PQAGLGSSLL  960
AQETAETDRL MCNEGSLSSV AALDFGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-67	397	529	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	831	845	KRRFKTLMMNKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028955399.1	0.0	B3 domain-containing transcription repressor VAL2-like
TrEMBL	A0A498K715	0.0	A0A498K715_MALDO; Uncharacterized protein
STRING	XP_009354857.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10323	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Link Out ? help Back to Top
Phytozome	MDP0000127640