PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000128008
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family DBB
Protein Properties Length: 202aa    MW: 22767.1 Da    PI: 6.2297
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000128008genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.27.1e-08433534
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                    C+ +e+  ++lfC  ++  lC++C ++ H
  MDP0000128008  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                   7**************************998 PP
2zf-B_box26.41.5e-085391337
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                    ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  MDP0000128008 53 IPCCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91
                   689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.9E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
CDDcd000211.05E-5333No hitNo description
PfamPF006433.7E-6342IPR000315B-box-type zinc finger
SMARTSM003365.8E-85196IPR000315B-box-type zinc finger
PROSITE profilePS501198.7595196IPR000315B-box-type zinc finger
PfamPF006431.4E-65385IPR000315B-box-type zinc finger
CDDcd000213.28E-65684No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNRLAN RHVRVGLATP SDIPCCDICE  60
NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGNKLGR SEELGLQPLD  120
QKKVRRDENQ LPDVKPKENE HNHNISPTAV LENNIDGDYK IDNTLIDLNT RPQRIRRQAS  180
KPGILCLLNV QIIDMQFESC EL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028954450.11e-134B-box zinc finger protein 19-like
SwissprotC0SVM53e-71BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A498JUK31e-131A0A498JUK3_MALDO; Uncharacterized protein
STRINGXP_009345267.11e-122(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-73DBB family protein