PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000128058
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 363aa    MW: 41122.1 Da    PI: 9.0947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000128058genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.5e-052532921155
                    HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    rR +++ +++  L++l+ +      +K + a++L++A  YI  Lq
  MDP0000128058 253 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASTYIMLLQ 292
                    7999**************99.....9***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.794242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-6253297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-4253296No hitNo description
SuperFamilySSF474595.23E-9253300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MCISNDLATK VSTVEVSSAY YARSMLKNPE GYTNATVCNI EFAXEKKPSQ NKSSQIKRKR  60
KQTVNMLVKE RESRPVSGLR RILVSQKSIE DQLSLHDWIF WAQMRNTDLL PSLPSHLYSC  120
ENNIDVQMTN WDAQMDMNSK IGFCMGSNAF ESDNHDNMRA ADYSLPLQQS SSLITYQPPG  180
LDCQAIQNAR KRPIEVDDFG GLVGDRTSLN ELYKNKRSKM TNNNSQQQYW HQQLQENSME  240
QQNNKKLHHV PVRRSQKLSD KITALQKLVS PYGKTDTASV LQEASTYIML LQEQIQQNLL  300
RMLGXSYKNA AALHSQESGS GQALDLRSKG LCLVPVSITQ KVTMEEGSDH LATSRKIVIA  360
NNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14560KKPSQNKSSQIKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008370991.21e-174transcription factor bHLH113-like isoform X1
TrEMBLA0A498KR841e-137A0A498KR84_MALDO; Uncharacterized protein
STRINGXP_008370991.11e-175(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.18e-22bHLH family protein