PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000128924
Common NameAP2D36
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family RAV
Protein Properties Length: 406aa    MW: 43943.1 Da    PI: 9.2165
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000128924genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.3e-1376124155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  MDP0000128924  76 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 124
                    78****9888.8*********3.....5**********99*************98 PP
2B393.91.2e-29213322196
                    EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                    f+k+ tpsdv+k++rlv+pk++ae+h               +   +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L +gD+v F
  MDP0000128924 213 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgsaatltvsASTACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLMAGDIVSF 308
                    89*************************999876666666533344999************************************************ PP

                    EE-SSSEE..EEEE CS
             B3  83 kldgrsefelvvkv 96 
                    +++   +++l++ +
  MDP0000128924 309 QRSTGPDKQLYIDW 322
                    *8766777677665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-1776133IPR016177DNA-binding domain
CDDcd000183.45E-2676134No hitNo description
PfamPF008475.2E-976124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2077132IPR001471AP2/ERF domain
PROSITE profilePS5103220.48177132IPR001471AP2/ERF domain
SMARTSM003802.2E-2977138IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.0E-39206326IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-28211322IPR015300DNA-binding pseudobarrel domain
CDDcd100177.44E-28212311No hitNo description
PfamPF023625.1E-27213322IPR003340B3 DNA binding domain
SMARTSM010195.8E-23213326IPR003340B3 DNA binding domain
PROSITE profilePS5086312.788213325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDGISSTEES TSSDSISISP LQHIVARVDP FAKSAPQVAS LCRVGSGASS VILDPELSSS  60
GGTGGVEAES RKLPSSRYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AARAYDVAAQ  120
RFRGRDAVTN FKPSSAEPIS SDDEENDDAE AAFLSSHSKS EIVDMLRKHT YNDELEQSKR  180
NNSAYGKRSR SNGSLGLFGT DNSGVPKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKHFP  240
LQSGSAATLT VSASTACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL  300
MAGDIVSFQR STGPDKQLYI DWKARMSVNN TNNNGSSPVQ VGPVPMVRLF GVNIFKIPGS  360
SGPGSADAAA AAAIGGGCNN NIGKRMREME LLELEFGKKP RIIGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5721032511117DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.136580.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324600.0GU732460.1 Malus x domestica AP2 domain class transcription factor (AP2D36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315729.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9C6M51e-140RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A498ICN60.0A0A498ICN6_MALDO; Uncharacterized protein
STRINGXP_008350869.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-131related to ABI3/VP1 1
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  4. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  5. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  6. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  7. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]