PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000128979
Common NameAP2D1, ERF1, LOC103452857
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 251aa    MW: 27570.1 Da    PI: 8.5591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000128979genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.7e-2188137255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg+++taeeAa+a+++a+ +++g
  MDP0000128979  88 VYRGIRQRP-WGKWAAEIRDPYK---GVRVWLGTYDTAEEAARAYDEAAVRIRG 137
                    69*******.**********865...4**********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-3288145IPR001471AP2/ERF domain
PfamPF008477.1E-1488137IPR001471AP2/ERF domain
PROSITE profilePS5103224.09288145IPR001471AP2/ERF domain
SMARTSM003802.8E-3888151IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2288145IPR016177DNA-binding domain
CDDcd000185.51E-3389145No hitNo description
PRINTSPR003676.0E-1289100IPR001471AP2/ERF domain
PRINTSPR003676.0E-12111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCGGAIISDF IAVKRALKLT AEDLWSDLDT ISDLLGIDYS NSINKQPENH KVVQKPKPSI  60
TKVTSDEKPK QASGSAAAAK GKRVRKNVYR GIRQRPWGKW AAEIRDPYKG VRVWLGTYDT  120
AEEAARAYDE AAVRIRGDKA KLNFAQPPSS SPLPSLAPDT PPPTKRRCIV AESTRVEPTQ  180
PSFQTGSYYY DPLYHGGGGG EMYAKKEVAG GDEVVVEQLS QVVSGSGESD SLYLWMLDDL  240
VAYQQQGQLL Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2289144359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-2279144162ATERF1
3gcc_A7e-2279144162ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.138470.0bud| fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1288560.0KC128856.1 Malus x domestica cultivar Taishanzaoxia ethylene response factor (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390617.10.0ethylene-responsive transcription factor RAP2-3-like isoform X1
TrEMBLA0A498IG200.0A0A498IG20_MALDO; Uncharacterized protein
STRINGXP_008390616.11e-165(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-32ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Li M, et al.
    Hypersensitive ethylene signaling and ZMdPG1 expression lead to fruit softening and dehiscence.
    PLoS ONE, 2013. 8(3): p. e58745
    [PMID:23527016]