PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000129011

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 324aa MW: 35558.5 Da PI: 7.0461

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000129011	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.00039	205	243	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq MDP0000129011 205 RKEKLGDRITSLHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 243 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.204	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-7	203	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.06E-5	203	247	No hit	No description
SuperFamily	SSF47459	8.11E-10	203	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAGNPNWWSS MHPPSLFPSQ YVQLGSPNSL PLPDHNLEPP QSWSQLLLGG LSSQEDTFGT 60 LSHNFQPKSR LESWEEDQIL ITQYPRAPLP PHGVDNIIKQ EANSQNSINL LGSSPHGDEE 120 FQLQTLSSCR PVWSPVQTMP VSSPSSCVTS LSNTNNILDF SYNKTDNKRN QHADHSSECN 180 STDTGGISKK ARVQQSPSQP PLKVRKEKLG DRITSLHQLV SPFGKTDTAS VLLEAIGYIR 240 FLQGQIEALS SPYLGNASKN TRKQQSLLND NCLKSKGAPN QESQDHKAKD LRSKGLCLVP 300 VSCTQHVGSD NGADYWAPAY GNGF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.9207	1e-120	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008342665.1	0.0	transcription factor bHLH68-like
Swissprot	Q8S3D1	2e-62	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A498HJ18	0.0	A0A498HJ18_MALDO; Uncharacterized protein
STRING	XP_008342665.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	3e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000129011

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]