PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000129026
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YC
Protein Properties Length: 222aa    MW: 24874.2 Da    PI: 10.6862
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000129026genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC41.33.5e-131172041299
          NF-YC  12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                    +++++k  ++P+ r+++i++++    +is +a  l+ ka e f+ ++   s   + + +r+++    +a++v++ + +dfl d vp++
  MDP0000129026 117 DEEEVKAYTFPMERVRRIIRSEYSDLRISNDAVFLINKATEKFLEKFCEESHACCVKDRRKAIAYKHLATVVSKRKRYDFLSDYVPEK 204
                    56799******************999***********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.44E-18110203IPR009072Histone-fold
PfamPF008081.7E-16125188IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.1E-21126203IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MATPKKDTPP NKTKEAKKPS TKSPPPKKNQ QTKKPTTAKA KTPEKKKPSS AKKSTNINKI  60
TSNGNARESD VEAVPSPSSE SRRGAEQNGG KFTKTPTPKS KKGTEKGKRK REGEXADEEE  120
VKAYTFPMER VRRIIRSEYS DLRISNDAVF LINKATEKFL EKFCEESHAC CVKDRRKAIA  180
YKHLATVVSK RKRYDFLSDY VPEKVKAEDA LAKRKLAEAK AG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174192RRKAIAYKHLATVVSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.234160.0cell culture
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358413.21e-157uncharacterized protein LOC103422153
TrEMBLA0A498KGE01e-155A0A498KGE0_MALDO; Uncharacterized protein
STRINGXP_008358413.11e-156(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.16e-29nuclear factor Y, subunit C10