PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000129335

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 351aa MW: 39924.3 Da PI: 6.4473

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000129335	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.9	6.7e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k+ePwdLp k+k +e+ewyfF+ +d+ky+tg r+nrat++gyWkatgkdke+++ MDP0000129335 16 LPPGFRFHPTDEELISHYLSPKVLDNFFCA-RAIGEVDLNKCEPWDLPWKAKMGEREWYFFCVKDRKYPTGLRTNRATEAGYWKATGKDKEIYK-A 109 79**********************9888.89***********888999************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfy+grapkg+kt+Wvmheyrle MDP0000129335 110 KTLVGMKKTLVFYEGRAPKGVKTNWVMHEYRLE 142 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.55E-65	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.621	16	166	IPR003441	NAC domain
Pfam	PF02365	6.1E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MENTSGFIME DEQMELPPGF RFHPTDEELI SHYLSPKVLD NFFCARAIGE VDLNKCEPWD 60 LPWKAKMGER EWYFFCVKDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK TLVGMKKTLV 120 FYEGRAPKGV KTNWVMHEYR LEGESSAHNL PKTTKNEWVI CRIFQKSSGG KKTHISGLLR 180 PSPFGNELRS XLLPPLMDSP AYNSDARTTT TACETSHVSC FSDPAEDQKT EDDIMDSFNN 240 SNNHHHHNNI HFASSSXSNP SAHLNTFYSN QITPNIGLLQ HQNSVLMLDQ SLSRMLVENQ 300 APNLRRSAKI EFSPDTGLSI DASSVVSNRE MVQDDPSYSS APIELDGLWY Y

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MENTSGFIME DEQMELPPGF RFHPTDEELI SHYLSPKVLD NFFCARAIGE VDLNKCEPWD  60
LPWKAKMGER EWYFFCVKDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK TLVGMKKTLV  120
FYEGRAPKGV KTNWVMHEYR LEGESSAHNL PKTTKNEWVI CRIFQKSSGG KKTHISGLLR  180
PSPFGNELRS XLLPPLMDSP AYNSDARTTT TACETSHVSC FSDPAEDQKT EDDIMDSFNN  240
SNNHHHHNNI HFASSSXSNP SAHLNTFYSN QITPNIGLLQ HQNSVLMLDQ SLSRMLVENQ  300
APNLRRSAKI EFSPDTGLSI DASSVVSNRE MVQDDPSYSS APIELDGLWY Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	2e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	2e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	2e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	2e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	2e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	2e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	2e-55	13	172	17	174	NAC domain-containing protein 19
4dul_A	2e-55	13	172	14	171	NAC domain-containing protein 19
4dul_B	2e-55	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12891	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ177423	0.0	FJ177423.1 Malus x domestica NAC domain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008341588.2	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-125	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A498HJI3	0.0	A0A498HJI3_MALDO; Uncharacterized protein
STRING	XP_008341588.1	0.0	(Malus domestica)
STRING	XP_008353426.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-125	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	MDP0000129335

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]