PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000129858
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 357aa    MW: 39814.2 Da    PI: 5.5684
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000129858genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding248.9e-08552247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WT+   +l+ +a + + ++   +W   ar +g g++ +++k ++q++
    MDP0000129858  5 GSWTARQNKLFENALAVYDKDtpeRWYNLARAVG-GKSVEEVKRHYQML 52
                     79********************************.************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.293257IPR017884SANT domain
SMARTSM007174.3E-7355IPR001005SANT/Myb domain
SuperFamilySSF466891.7E-11660IPR009057Homeodomain-like
CDDcd001673.19E-5653No hitNo description
Gene3DG3DSA:3.90.950.108.3E-20114193IPR029001Inosine triphosphate pyrophosphatase-like
SuperFamilySSF529723.53E-17114193IPR029001Inosine triphosphate pyrophosphatase-like
PfamPF025458.8E-34115355IPR003697Maf-like protein
Gene3DG3DSA:3.90.950.103.6E-28197356IPR029001Inosine triphosphate pyrophosphatase-like
SuperFamilySSF529725.17E-24209355IPR029001Inosine triphosphate pyrophosphatase-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MASSGSWTAR QNKLFENALA VYDKDTPERW YNLARAVGGK SVEEVKRHYQ MLVEDVNKIE  60
AGEVPLPNYR KSGGGNTKSY SMDIEEQRLK RPEMLTLLAK NDRYRIVVLC KDGMIILGSA  120
SIARRKILAE MGYEFTVVTA DIDEKSIRTE KPEELVLVLA KAKADAIISK LQSINXQEKD  180
XEPTIVIAAD TLTEKSQAEA ISQKLPVGDY IKDAKPTLLV TSDQVVVYEG VIREKPSSKE  240
EARQFLKDYS GGHAATVGSV HVTNLKTGFS KGEWDRVEIY FHKIPDEVIE KLIEEGIVLK  300
VAGGLIIEHP LILPYVKEVS PVXIVIFELV WCLQVGTTDS VMGLPIDLTR TLLKEAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-28290688RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.22941e-165bud| fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018504981.11e-150PREDICTED: maf-like protein DDB_G0281937 isoform X1
TrEMBLA0A0L9V2111e-150A0A0L9V211_PHAAN; Uncharacterized protein
STRINGXP_008364992.11e-146(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-33RAD-like 1