PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000129923

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 1007aa MW: 112982 Da PI: 7.8152

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000129923	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.3	2e-08	247	305	22	81
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 r+k ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++ + e++ +y MDP0000129923 247 TRNKTRADKDREVADFLQKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGSEREQV-GKSY 305 46678888999*************************************9744443.4445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	3.86E-16	843	999	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	4.9E-6	867	962	No hit	No description
CDD	cd00180	4.04E-12	871	1000	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1007 aa Download sequence Send to blast
MGDKKGETTK KNPQQPQQQQ QQQQISPSPN DQQPPPTAVN ISGAAAAAGV SFNIPPPLFV 60 PTGTPTTSSS SPFDQHQFEA AVNPKRPRFT STTGQWKLLP SPSSQQKQPQ IPILPSESNP 120 SRSPNPKNTQ LSQPHVSTTR AASSSDTASS WPPHSPLPSL SATSGHDTNK TEEGDPQNPV 180 HHHQQFRKGK YVSPVWKPNE MLWLARGWRI QYQGGAARGS SDHGSGSSSR AEQLQTETGG 240 ATTTTHTRNK TRADKDREVA DFLQKHGVNR DAKTAGTKWD NMLGEFRKVY EWERGSEREQ 300 VGKSYFRLSP YERKLHRLPA SFDEEVFEEL SQFMGSRMRT TQSRLGSVGD DSRSALVMTR 360 SLPQPPSFKE DDFPLSGRGK QLMIMSGGGE PFYHGGRGTL LGFPHHDQSS LDFATGLSSS 420 SSKELRRIGK IRMTWEESVS LWAEEGEHHR GRLRLQGSSF LNADELTFFD DSMVACTMEA 480 FEDGPFRGFS VDRFVSGQQV KVFGRRRPSS ATSGFNEKVQ LPLPESSSRS MPPFEFQDPT 540 EYYVGCLRVP PPSLPTLSEL QWYVQEPPPE ELRFPLRKDL YRDLPQGKEI FFTTSTELLD 600 CRAITYDILS PIIRTNPSLS AATATATSRD SFIPIWDDCI NRIVSKFCSV EMVFIRKPNA 660 SSPTEPLQDQ WPNVTGFVRN FCLWRGEEAD NLRDDRDINP SSSIVEKLLW TYMDLPYILG 720 YYAIGHVVTF CALSRVQDRI IRTDLGTVDL SSTSERLKAL VPCFRIASLL PLLADRCFNI 780 SSNCNGGSYK MPPYSDFERI DMGSGNAIEM TPTTVTRFYS NIRKATAVKE IYDFLDQRIP 840 HAEYIHRSLE KGWALVFKPR GCKFKPTNCD QLVEALMYVT KALVALHDLS FMHRDICWEK 900 VMRNERDNEW FVCGFEEAVG APQIYPHSVG MAGDAVARGR HAPEMERGLH GVKVDVWGVG 960 NLVRSCGLTG VPKLLRELQN RCLDQNPEKR PTAADCYHHL LQLQSSL

Sequence ? help Back to Top

Protein Sequence Length: 1007 aa Download sequence Send to blast

MGDKKGETTK KNPQQPQQQQ QQQQISPSPN DQQPPPTAVN ISGAAAAAGV SFNIPPPLFV  60
PTGTPTTSSS SPFDQHQFEA AVNPKRPRFT STTGQWKLLP SPSSQQKQPQ IPILPSESNP  120
SRSPNPKNTQ LSQPHVSTTR AASSSDTASS WPPHSPLPSL SATSGHDTNK TEEGDPQNPV  180
HHHQQFRKGK YVSPVWKPNE MLWLARGWRI QYQGGAARGS SDHGSGSSSR AEQLQTETGG  240
ATTTTHTRNK TRADKDREVA DFLQKHGVNR DAKTAGTKWD NMLGEFRKVY EWERGSEREQ  300
VGKSYFRLSP YERKLHRLPA SFDEEVFEEL SQFMGSRMRT TQSRLGSVGD DSRSALVMTR  360
SLPQPPSFKE DDFPLSGRGK QLMIMSGGGE PFYHGGRGTL LGFPHHDQSS LDFATGLSSS  420
SSKELRRIGK IRMTWEESVS LWAEEGEHHR GRLRLQGSSF LNADELTFFD DSMVACTMEA  480
FEDGPFRGFS VDRFVSGQQV KVFGRRRPSS ATSGFNEKVQ LPLPESSSRS MPPFEFQDPT  540
EYYVGCLRVP PPSLPTLSEL QWYVQEPPPE ELRFPLRKDL YRDLPQGKEI FFTTSTELLD  600
CRAITYDILS PIIRTNPSLS AATATATSRD SFIPIWDDCI NRIVSKFCSV EMVFIRKPNA  660
SSPTEPLQDQ WPNVTGFVRN FCLWRGEEAD NLRDDRDINP SSSIVEKLLW TYMDLPYILG  720
YYAIGHVVTF CALSRVQDRI IRTDLGTVDL SSTSERLKAL VPCFRIASLL PLLADRCFNI  780
SSNCNGGSYK MPPYSDFERI DMGSGNAIEM TPTTVTRFYS NIRKATAVKE IYDFLDQRIP  840
HAEYIHRSLE KGWALVFKPR GCKFKPTNCD QLVEALMYVT KALVALHDLS FMHRDICWEK  900
VMRNERDNEW FVCGFEEAVG APQIYPHSVG MAGDAVARGR HAPEMERGLH GVKVDVWGVG  960
NLVRSCGLTG VPKLLRELQN RCLDQNPEKR PTAADCYHHL LQLQSSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008376999.1	0.0	uncharacterized protein LOC103440096
TrEMBL	A0A498JHC8	0.0	A0A498JHC8_MALDO; Uncharacterized protein
STRING	XP_008376999.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-08	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000129923