PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000130123
Common NameNAC22
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 255aa    MW: 28863.7 Da    PI: 9.2096
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000130123genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.95.7e-51141381128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeelv +yL++kv + +l++ ++i+evd++k++PwdLp       +e yfFs+r+ ky++g+r+nrat+sgyWkatg dk++++  
  MDP0000130123  14 LPPGFRFHPTDEELVLQYLRRKVYSCPLPA-SIIPEVDVCKADPWDLPGD---CAQERYFFSTREAKYPNGNRSNRATSSGYWKATGLDKQIVTCr 105
                    79****************************.89***************44...35799*********************************98765 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +g++vg+kktLvfy+g+ p+g++tdW+mheyr+
  MDP0000130123 106 GGQVVGMKKTLVFYRGKPPHGTRTDWIMHEYRF 138
                    8999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-6110173IPR003441NAC domain
PROSITE profilePS5100557.78414173IPR003441NAC domain
PfamPF023657.1E-2715137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MERINFVKNG VLRLPPGFRF HPTDEELVLQ YLRRKVYSCP LPASIIPEVD VCKADPWDLP  60
GDCAQERYFF STREAKYPNG NRSNRATSSG YWKATGLDKQ IVTCRGGQVV GMKKTLVFYR  120
GKPPHGTRTD WIMHEYRFVL PENPASIAPP EKNATQSPVV PMDDWVLCRI FFKKRGGKNE  180
EQQVQQPSCD VRKPKNSRPV FYDFMTKDRA NLSLAPCSSS SGSSGITDVV SSEQVDNDHE  240
ESSSSNSLGL IRRKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-521217415166NO APICAL MERISTEM PROTEIN
1ut4_B9e-521217415166NO APICAL MERISTEM PROTEIN
1ut7_A9e-521217415166NO APICAL MERISTEM PROTEIN
1ut7_B9e-521217415166NO APICAL MERISTEM PROTEIN
4dul_A9e-521217415166NAC domain-containing protein 19
4dul_B9e-521217415166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.39630.0bud| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281000.10.0NAC transcription factor 25-like
SwissprotQ9FY932e-95NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A498HN020.0A0A498HN02_MALDO; Uncharacterized protein
STRINGXP_008340256.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-95NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]