PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000130785
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 371aa    MW: 41597 Da    PI: 8.4364
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000130785genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.18e-5451311129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    lppGfrFhPtdeel+++yL +kv++ +++  ++++ vd++k+ePwdLp k++ +ekewyfF  rd+ky+tg r+nrat++gyWk+tgkdke+ +  
  MDP0000130785   5 LPPGFRFHPTDEELITHYLXHKVSDVSFTS-KAVAVVDLNKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIRR-V 98 
                    79*************************999.88***************988999***************************************9.9 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                    g lvg+kktLvfykgrap+gek++Wvmheyrle
  MDP0000130785  99 GVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131
                    99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-613151IPR003441NAC domain
PROSITE profilePS5100559.2255151IPR003441NAC domain
PfamPF023652.6E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MQESLPPGFR FHPTDEELIT HYLXHKVSDV SFTSKAVAVV DLNKCEPWDL PGKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIRRVGV LVGMKKTLVF YKGRAPRGEK  120
SNWVMHEYRL ENKHPFKSSK EEWVVCRVFQ KNISAVKKPQ QATTSSQKQP TNESPCDDTN  180
SIVNEFGDIE LPNLNSNINA NSSSGFSNNI SSPQSYYSNI LDHSKNNIND VTNMSLKMTW  240
AATAAREAAA NALSLPSSLL SPSNLSVNSL LLRALQLRSS TNNNGSNYQP RATNHVQATA  300
GTSTLDYSSS YDNIQQQGMM PSMSHNHFGS STTMDHVNSN FQASPSSTND QMMESMPLQH  360
SEQPFNLDSI W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-57215714171NO APICAL MERISTEM PROTEIN
1ut4_B5e-57215714171NO APICAL MERISTEM PROTEIN
1ut7_A5e-57215714171NO APICAL MERISTEM PROTEIN
1ut7_B5e-57215714171NO APICAL MERISTEM PROTEIN
4dul_A5e-57215714171NAC domain-containing protein 19
4dul_B5e-57215714171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393314.20.0protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A498I8910.0A0A498I891_MALDO; Uncharacterized protein
STRINGXP_008393314.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-103NAC domain containing protein 58