PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000130802
Common NameAP2D12
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 476aa    MW: 52063 Da    PI: 8.1431
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000130802genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.5e-11155193144
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAak 44 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+
  MDP0000130802 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHYAAR 193
                    78*******************......55**********666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-10155223IPR016177DNA-binding domain
PfamPF008471.3E-4155193IPR001471AP2/ERF domain
PROSITE profilePS5103212.22156213IPR001471AP2/ERF domain
CDDcd000183.33E-20156223No hitNo description
SMARTSM003805.0E-25156228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-10156222IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MLDLNINFTD ITNSKSMEVD DAGTSNSSVV NADEAPTPGN AGDEDSTNNT TSSFMFDILR  60
REKDGLCISG DGDQTQSLQF VTRPLFPVAG YGGGGKEGAD CGLGLSSSSL STARTHWLNL  120
SFAESGGQTQ AELRVVQQKK QPPRKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHY AARISSLRFN DFRAYDRAAI KFRGIDADIN FNVGDYEEDM KLLGHLNKEE  240
FVHVLRRQTT GASRGNSKYR GVAAVPQPEC GAIWEDRMGQ VPRKKVFEKE AIKCRTGREA  300
VTNFDPSIYE GEMVLNASVE GSGHNLDLSL RISQPCSAGQ KRIGKLGDFQ FPKERPMVNG  360
FSSAAMGQLP HVLTTVAKCP ALYPGFVQRH GEITSDHNRL QPISSPRYTN WACQVYGNNN  420
NVSPMQVFSI AASSGFPSST ATTPPPSASL PPNLQDSSAS AYSLDCLPFT ATANIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324360.0GU732436.1 Malus x domestica AP2 domain class transcription factor (AP2D12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280952.10.0ethylene-responsive transcription factor RAP2-7-like
TrEMBLD5L0Z60.0D5L0Z6_MALDO; AP2 domain class transcription factor
STRINGXP_008376306.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-67related to AP2.7
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]