PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000131481
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARF
Protein Properties Length: 773aa    MW: 85244 Da    PI: 8.5235
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000131481genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.4e-23100201199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + ++
  MDP0000131481 100 FAKTLTQSDANNGGGFSVPRYCAETIfpkldysADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAEN 191
                    89****************************996555545..8************************************************..4488 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    + l+v+++r+
  MDP0000131481 192 GDLCVGIRRA 201
                    999****997 PP
2Auxin_resp111.86.8e-37275358183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa+ a+++++FevvY+Prast+eF+v ++ v++a++ +++ GmRfkmafetedss++++ +Gtv++v+ ++p+ WpnS+Wr+L+
  MDP0000131481 275 AATMAAKGQPFEVVYYPRASTPEFCVXASAVRAAMREQWCSGMRFKMAFETEDSSRISWfMGTVSSVQVANPICWPNSPWRLLQ 358
                    68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-3892203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-2993207IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-2199200No hitNo description
PfamPF023626.3E-22100201IPR003340B3 DNA binding domain
SMARTSM010193.4E-23100202IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056100202IPR003340B3 DNA binding domain
PfamPF065075.1E-32275358IPR010525Auxin response factor
PROSITE profilePS5174518.843661741IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MAGTKATRVG PNPMGRTMKE SEKSLDPQLW HACAGGMVHM PPVNSKVFYF PQGHAEHAQS  60
GGGVDFSAAS LRIPSLVLCR VAAIKFMADP ETDEEKPASF AKTLTQSDAN NGGGFSVPRY  120
CAETIFPKLD YSADPPVQTV IAKDVHGEVW KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA  180
GDSIVFLRAE NGDLCVGIRR AKRGLDGGGG NEVASGWNNS HSSGGGSGGC VLPYGSFCVF  240
LREEDNKMRN GGGNLSPNGN MRGKGRVRPE SVVEAATMAA KGQPFEVVYY PRASTPEFCV  300
XASAVRAAMR EQWCSGMRFK MAFETEDSSR ISWFMGTVSS VQVANPICWP NSPWRLLQTW  360
HCRPXGLKLA LWELRTHLVV HILLGHSXNY LRSVVYLNSV TLLKSCHLII WLDIDXQTTI  420
LQVTWDEPDL LQNVXCVSPW LIELVSNFPM IHMSPFSPPR KKLRLPQHPD FSLDGQLTLP  480
SFSGNPLGPS SPLCCLPNNT PSGIQGARHA QFRISLSDLH LNNKLQSGLF SSSFQRFDQS  540
SRISNGIRAG HTSSNENLSC LLTMGNSSQN SEKPDNVKKH KFLLFGQPIL TEQQISRSCS  600
SEAVSQLLPG KNSKDGSQDK TXFFFNGSES VLGRQVXLEK STSAGFSWNK DFQATDLDLE  660
TGHCKVFMES EDVGRTLDLS ALCSYEELYR RLANMFEIEK PEMMSHVLYR DVTGAVKQTG  720
VEPFSDFMKT AKRLTILTHP ASESIGRTWI RGMQNAENGL GATXKTGPLS IFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A8e-602837422352Auxin response factor 1
4ldw_A8e-602837422352Auxin response factor 1
4ldw_B8e-602837422352Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.158780.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367062.10.0PREDICTED: auxin response factor 18 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A498KAT70.0A0A498KAT7_MALDO; Auxin response factor
STRINGXP_008359296.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]