PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000131874
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 365aa    MW: 39781.7 Da    PI: 4.6237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000131874genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43.1e-092893291055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r+RR++iN ++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  MDP0000131874 289 RKRREKINARLRVLQGLIPNG-----TKVDISTMLEEAVHYVKFLQ 329
                    9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-13278345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.272279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-11284338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-10285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.96E-11288333No hitNo description
PfamPF000102.0E-6289329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEHSEAVSEG EWTSLSGMYI AEEVDFMSQL LGKFSNQTSS MGIAPDAFWS GGNYEGSNYY  60
SSETSYSNSL EGNFSGGNRT FYPTSSSESY YLSESSHPML VTNNSKISMS IDFGAGDVIK  120
TLNSSLIEGD HDQCLNQETS DGNAEESGGN PAEAVALGNQ RFDMTAVKEQ SMEEINPTKN  180
SLKVSQSLEN VQMNKRNIKA KKSQQVTASN NEEDGNAAGL NRQSYSCCSG DDQSNIVASH  240
SHENSQELSG VSITSTSSLS PTEVAALNLS GKSRARRGSA TDPQSLYARK RREKINARLR  300
VLQGLIPNGT KVDISTMLEE AVHYVKFLQL QIKLLSSDDT WMYAPIYYSG MNLGLDLKLT  360
TPQQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288293RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028964757.10.0transcription factor bHLH139-like
TrEMBLA0A498IW610.0A0A498IW61_MALDO; Uncharacterized protein
STRINGXP_009349168.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-53ROOT HAIR DEFECTIVE 6-LIKE 2