PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000133262
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 204aa    MW: 23080.5 Da    PI: 8.7915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000133262genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-133678754
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI++L
  MDP0000133262 36 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQEL 78
                   57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.5072978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-183093IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-133283No hitNo description
SMARTSM003535.9E-153584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-163593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-113678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAVVRGSWGL DEAFSGYYDS SSPDGAASSM ASKNIVSERN RRKKLNERLF ALRAVVPNIS  60
KMDKASIIKD AIEYIQELHE QERRIQTEIV ELESGKSNKN QGSDFEQDLP VLLRSKKKKI  120
DQIYDSEGSR TSTIEILELR VTYMGEKTVV VSLTCSKRTD TMVKLCEVFE SLKLKIITAN  180
ITSFNGRVLK TVFVEVSCFF LTTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1434109978Transcription factor MYC2
5gnj_B2e-1434109978Transcription factor MYC2
5gnj_E2e-1434109978Transcription factor MYC2
5gnj_F2e-1434109978Transcription factor MYC2
5gnj_G2e-1434109978Transcription factor MYC2
5gnj_I2e-1434109978Transcription factor MYC2
5gnj_M2e-1434109978Transcription factor MYC2
5gnj_N2e-1434109978Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.140110.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358594.21e-135transcription factor bHLH35-like
SwissprotQ2HIV93e-82BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A498I9471e-137A0A498I947_MALDO; Uncharacterized protein
STRINGXP_008358594.11e-134(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.23e-87bHLH family protein