PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000133930
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HB-PHD
Protein Properties Length: 1082aa    MW: 119158 Da    PI: 4.7455
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000133930genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.52.3e-13926972652
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
       Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                    ++ +  +++L + F++n+yp+++++e LA++lg+  +qV+ WF N R
  MDP0000133930 926 KLGEAVTQRLSKSFKENHYPDRSMKESLAQELGIMAKQVSKWFENAR 972
                    55667899*************************************99 PP
2PHD37.45.8e-13525580151
                    SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
            PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                    +C+ Cg+     +++++lCdg C++ fH+ Cl+++l se++p +   wlC+ C++k
  MDP0000133930 525 FCAKCGSkdVSLQNDIILCDGaCDRGFHQFCLEPPLLSEDIPPDdeGWLCPGCDCK 580
                    6999**964444********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.32E-13515583IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.0E-13521580IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.994523580IPR019787Zinc finger, PHD-finger
CDDcd155044.02E-27525577No hitNo description
SMARTSM002491.8E-9525578IPR001965Zinc finger, PHD-type
PfamPF006282.4E-10525580IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590526577IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.608.2E-14895973IPR009057Homeodomain-like
SuperFamilySSF466898.55E-11906973IPR009057Homeodomain-like
PROSITE profilePS5007113.297918978IPR001356Homeobox domain
SMARTSM003896.9E-10920982IPR001356Homeobox domain
CDDcd000863.07E-10921972No hitNo description
PfamPF000468.7E-11928972IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1082 aa     Download sequence    Send to blast
MADATQLDIP PERDSSHATK CQEEGTSEQI HEIGSESHCS EPAKQSIGCA IVRNELREIC  60
NAGGQSESLS ENVTENSHLE QLGQPSEDVS KSSQRGAENV FATQGSHSSS GYKQDESLQT  120
ITAVSPCTMK DQLRSFSENV SKNSLIDQME MPCEDLGVNN PTNKTSCSEQ MPLEQESYCA  180
FGTSSGELAE EKHPSSSDRV QNDQVPICGS NEHLQSSSEN VNMTSLNEQA GLPPEDLSKT  240
CQTGKVSCSN QITLQVTNEF VCGSVHSESE TQKDQLDSVP AHNNEVTSTQ AAPSSIFFEQ  300
SRSCIEAVTQ DPPTGHLELP IEDAGKSPPN DKEMEPLPED VTQNFSLEKT EMPSKNGPKD  360
KQNPKSRKKK YMSKSSLGSD RVLRSKIGEK PRDPKLSNNA TLESSNSVAN VSNVEHKRRK  420
KRKQSQQNRV IDDEFSRVRK HLRYLLNRIS YEKSLIDAYS GEGWKGSSLE KLKPEKELQR  480
ATFEILRRKL KIRDLFQHLD LLCSEGMFPE SLFDSEGQID SEDIFCAKCG SKDVSLQNDI  540
ILCDGACDRG FHQFCLEPPL LSEDIPPDDE GWLCPGCDCK VDCFDLLNDS QGTNLSVTDS  600
WEKVFPEAAA AASGHNQDHS HGLPSDDSDD NDYDPDGPET NDEVPGEESS SDESEYASAS  660
DGLDTPKNND EQYLGLPSDD SEDDDYNPDA PEVIEDDKKE SSSSDFTSDS EDLGAALDDN  720
NMSAEDVEGP KSTSLDESGP LRGSSKQSSR RGQKKQPLKD EVLSLLELGP GQGGAAPVSG  780
KRHIERLDYK KLHDSLACLC LLYLPRILKE TYGNVPTDSS DDEEWNDTAA PRKRKKGTGQ  840
APMVSPNGDS SNINNGVITN DIKHDLDENE NTPKRAPRGN KNTPKRARRK SKVEDTSNLS  900
NKSRNGSTQS ASTSEKGGSS RSTYRKLGEA VTQRLSKSFK ENHYPDRSMK ESLAQELGIM  960
AKQVSKWFEN ARHCLKVSVD KSAAGNGTPL PQTNGKQLEQ DGTTFGAQNK ELPRTDDPMT  1020
GSSSRDMKDS ELVTPKSSKR KAISPNNRKR ERKSDDLDPE NETPETKRKG TRLMTRRRKS  1080
IA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416422KRRKKRK
2416423KRRKKRKQ
3831835RKRKK
410741079TRRRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338248.10.0homeobox protein HAT3.1-like isoform X1
RefseqXP_008338250.10.0homeobox protein HAT3.1-like isoform X1
RefseqXP_008338251.10.0homeobox protein HAT3.1-like isoform X1
RefseqXP_017178666.10.0homeobox protein HAT3.1-like isoform X1
RefseqXP_028965500.10.0homeobox protein HAT3.1-like isoform X1
TrEMBLA0A498J0U90.0A0A498J0U9_MALDO; Uncharacterized protein
STRINGXP_008338253.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-101Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain