PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000135205
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 198aa    MW: 22102.9 Da    PI: 6.6054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000135205genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1889139255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp +ng  +r +lg++ t+e+A  a+++a+ kl+g
  MDP0000135205  89 HYRGVRRRP-WGKYAAEIRDPAKNG--ARLWLGTYETPEDAGLAYDRAAFKLRG 139
                    8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-3088148IPR001471AP2/ERF domain
CDDcd000184.03E-2988149No hitNo description
PROSITE profilePS5103223.47289147IPR001471AP2/ERF domain
PfamPF008471.5E-1289139IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2289148IPR016177DNA-binding domain
SMARTSM003804.7E-3689153IPR001471AP2/ERF domain
PRINTSPR003673.2E-1390101IPR001471AP2/ERF domain
PRINTSPR003673.2E-13129149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MYGQETLELE SDDFALLESI HQHLDXLEPQ AMSVSXDNVP VIFPVLTTED WWESLFVVTD  60
HDAHATFGGL HGVVKNEAAV AHEVYAVKHY RGVRRRPWGK YAAEIRDPAK NGARLWLGTY  120
ETPEDAGLAY DRAAFKLRGC KAKLNFPHLI GSSSIEPVRV TPKRGRLPXH SSPXASTSDG  180
YETQMPKRNK AGIEYLAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3188153469ATERF1
3gcc_A1e-3188153469ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028960702.11e-107ethylene-responsive transcription factor 13-like
TrEMBLA0A498JC648e-95A0A498JC64_MALDO; Uncharacterized protein
STRINGXP_008363915.11e-142(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-43ethylene-responsive element binding factor 13