PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000135256
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 309aa    MW: 33367.4 Da    PI: 9.6545
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000135256genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS30.64.2e-10481031164
           GRAS  11 avssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykal 64 
                     +++ d++  ++lL+++++++sp +  d+mqRla yf+ +L+ar+a+s++++yk  
  MDP0000135256  48 EFAAIDKRTGNELLKQIRQHSSPMAmgDAMQRLAPYFAHGLEARMAGSGTHIYKRP 103
                    5677788999***********997555**************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.5E-748103IPR005202Transcription factor GRAS
SuperFamilySSF533356.76E-10139225IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF017288.2E-10139189IPR002877Ribosomal RNA methyltransferase FtsJ domain
Gene3DG3DSA:3.40.50.1501.2E-11143188IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.3E-11189295IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032259Biological Processmethylation
GO:0008168Molecular Functionmethyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGARRSNKQL AVYTKSTVSL EMVDTVFLNC GQGESPLCET LQSETIKEFA AIDKRTGNEL  60
LKQIRQHSSP MAMGDAMQRL APYFAHGLEA RMAGSGTHIY KRPFVQASIR LLMVFNGLAS  120
FNVSRLGLFS NYPPKNLRLQ AHNKMDKLIT PGSSVLDLGC APGAWLQVAC QSLGPLKNGG  180
LVVGIDLKQK GFSVVLSGMC PLVSGISSRD AALSLELGMQ ALNVAVGGAA LAHSNNEIQT  240
EESNVGATTS SDDNGVLRRG GNLVIKLLES EXVQEINQIC KPLFRKASLL RPKATDVIWF  300
SLLYARTKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017188427.21e-114uncharacterized protein LOC103435739 isoform X1
TrEMBLA0A498KLA01e-101A0A498KLA0_MALDO; Uncharacterized protein
STRINGXP_008372372.11e-107(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.17e-17SCARECROW-like 14