PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000135282
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 503aa    MW: 56130 Da    PI: 7.7287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000135282genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-10308353454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+E++RRd++N+++  Lr+++P+        ++ ++ L  Av Y+++L
  MDP0000135282 308 NHVEAEKQRRDKLNHRICLLRSIVPNV-----SEMDRSSLLADAVAYMNQL 353
                    799***********************5.....48***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-3318217IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.57E-14302370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.69E-10302354No hitNo description
PROSITE profilePS5088813.96304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-13308366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-8308353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-10310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEELTSFCCS PTSSPTFQRR VQFIVQNRPE CWLYAIFWQA SKDSISDQVA LSWAGGHLNN  60
PRVRVPSNRS NRVITNNYQP KLGFSNMEKK KTAIISKRDE DVVDLDMRLL ADNHDGTGDA  120
THDSDRFYFY GVSLTQSFAA GQASKNILGR AFCSGGFVWL AGGHELQLYE CERVKEARMH  180
GIQTLVCITT SCGVLELASL DVIMQDWGLV HLSKSLFGSD QKNNKFKLLV PDPLEKIGFL  240
SGGQKEFTIQ EGGANEPIIH TDGSSTGSSY DSFGNFTPAN TENPQSKKRG RSSSSNHGAT  300
SRESQLLNHV EAEKQRRDKL NHRICLLRSI VPNVSEMDRS SLLADAVAYM NQLKGKVDEL  360
EAKIQAQPPQ KPLLTSQSTR SITDEHHQCS SCSNNYSNNN NHNNNNDNLN LNNNNDKVRG  420
TNVLEVDVKI VGSNQAMIRV QCPDQDYPYA RLMNALKGLE LQVYHASISS VKKSMIQDVV  480
VGLPYGFTSE EALRLGIIKR WYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-19162178192Transcription factor MYC3
4rqw_B3e-19162178192Transcription factor MYC3
4rs9_A3e-19162178192Transcription factor MYC3
4yz6_A3e-19162178192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955563.10.0transcription factor MYC3-like
TrEMBLA0A498KDH10.0A0A498KDH1_MALDO; Uncharacterized protein
STRINGXP_008358724.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.19e-50bHLH family protein