PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000135374

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 116aa MW: 13216.6 Da PI: 10.2237

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000135374	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	60.8	4.6e-19	5	76	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrap.kgektdWvmheyrl 128 e k+wyf+s+r+ +nr+t++gyWk+ g +++++s+ +++vg+kk L+f+ g+ap +g kt+W+mheyrl MDP0000135374 5 EGKQWYFYSRRA--------QNRVTNNGYWKTLGIEEPIFSSsssnPTKKVGMKKYLTFFVGEAPnSGIKTNWTMHEYRL 76 6789**9985........589**************966655566******997762589*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.746	1	98	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-21	4	81	IPR003441	NAC domain
Pfam	PF02365	7.5E-12	9	76	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
KALSEGKQWY FYSRRAQNRV TNNGYWKTLG IEEPIFSSSS SNPTKKVGMK KYLTFFVGEA 60 PNSGIKTNWT MHEYRLSSSA SDCASSSTTT TTSRSSKRRG QSNTVSNACH HHYYYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-15	1	76	65	142	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-15	1	76	65	142	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-15	1	76	65	142	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-15	1	76	65	142	NO APICAL MERISTEM PROTEIN
4dul_A	2e-15	1	76	65	142	NAC domain-containing protein 19
4dul_B	2e-15	1	76	65	142	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.15312	1e-175	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008357603.1	1e-71	NAC domain-containing protein 104-like isoform X1
Swissprot	Q8GWK6	4e-25	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A498HUI2	3e-64	A0A498HUI2_MALDO; Uncharacterized protein
TrEMBL	D9ZJ88	2e-68	D9ZJ88_MALDO; NAC domain class transcription factor
STRING	XP_008357603.1	4e-71	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-27	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	MDP0000135374

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]