PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000135416
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 221aa    MW: 24624.5 Da    PI: 9.5218
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000135416genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-096361345
                     HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     vda+++ G++ W+  a++++ gRt++ +k++w+
    MDP0000135416  6 VDAHAKVGNR-WAEXAKRIP-GRTENAIKNHWN 36
                     79********.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.92143IPR017930Myb domain
CDDcd001673.58E-6639No hitNo description
PfamPF002492.3E-7636IPR001005SANT/Myb domain
SuperFamilySSF466894.73E-7747IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-10737IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
GREGXVDAHA KVGNRWAEXA KRIPGRTENA IKNHWNATKR RQTSKRKNKQ PEGNNGNHKN  60
KPHSSILQNY IRSKNLMNNS SNISNVSTST PTSSSTLSQN DPSKTHLNTL VTEPSDQSTT  120
SNCFGSPLNL ADSFYDELVF MQNFFTNNPH NLNHPQQPSN STDNNVKLIV SPMEPSQNPN  180
MYDFATTSTT NFPTNVWPNL PESDLDPRGK NDPFLVGCPP L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385072.21e-104transcription factor MYB119-like
TrEMBLA0A498INN01e-100A0A498INN0_MALDO; Uncharacterized protein
STRINGXP_008385072.11e-102(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-19myb domain protein 119